Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   IUJ52_RS19625 Genome accession   NZ_CP064381
Coordinates   817196..818377 (+) Length   393 a.a.
NCBI ID   WP_004728185.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 812196..823377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS19610 (IUJ52_19615) - 812995..813990 (-) 996 WP_004728182.1 GTP-binding protein -
  IUJ52_RS19615 (IUJ52_19620) clcA 814461..815858 (+) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  IUJ52_RS19620 (IUJ52_19625) - 816019..816978 (+) 960 WP_004728184.1 TDT family transporter -
  IUJ52_RS19625 (IUJ52_19630) cqsA 817196..818377 (+) 1182 WP_004728185.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IUJ52_RS19630 (IUJ52_19635) cqsS 818539..820590 (-) 2052 WP_004728186.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43557.55 Da        Isoelectric Point: 7.1129

>NTDB_id=501460 IUJ52_RS19625 WP_004728185.1 817196..818377(+) (cqsA) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MKSDAKNNRLPDSIQDRLNFFVRDLIESNQNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIKARLKQAIDTTHDSVFMS
AIFLQDDQTKPSLEHQLAEFVNFDSCLLSQSGWNANTSLLQTVCAPGSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLRKQIQRHGPGLIVVDSIYSTIGTLAPLTELVHIAKETQCAILVDESHSLGTHGDKGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNANQCIPFVGYPAIFSSTILPYEIAALEATLEVIKSANDRRKNLFRNAQLLSQGLNKIGIHIRSQSQ
IIALETGDEKNTEKVRDYLEDNGVFGAVFCRPATSKTKNIIRLSLTSAVTEQQIDRILSVCQSAVKRGDMIFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=501460 IUJ52_RS19625 WP_004728185.1 817196..818377(+) (cqsA) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGAAATCTGATGCCAAAAATAATCGGTTACCTGACTCGATTCAGGACCGTTTGAATTTCTTCGTTCGCGATTTAATTGA
AAGCAATCAAAACGGTAAACATCTGGTATTAGGAAAGCGCCCCTCCCAAGGTGATATTGTTTTACAAAGTAACGATTACC
TCAGCCTTGCCAACCATCCATTGATCAAGGCGCGTTTAAAACAGGCCATTGATACCACGCACGACAGTGTGTTTATGTCG
GCTATTTTCTTACAAGATGATCAAACCAAACCTAGCCTAGAGCACCAACTGGCTGAGTTTGTCAATTTCGACTCGTGTCT
GTTGTCTCAATCCGGTTGGAATGCCAATACGTCGCTACTGCAGACCGTCTGCGCACCAGGCAGCAATGTCTATATCGACT
TCTTTGCGCACATGTCGATGTGGGAAGGTGCGCGTTATGCCAATGCGAACATTCATCCGTTCATGCATAACAATTGTGAC
CATCTGCGCAAACAGATCCAACGTCATGGCCCTGGGCTCATTGTGGTCGATTCCATCTACAGCACCATTGGTACGCTTGC
GCCACTGACTGAATTGGTTCATATCGCCAAAGAGACTCAGTGCGCCATATTGGTCGATGAATCGCATTCACTTGGCACCC
ATGGCGATAAAGGCGCTGGCTTACTGGCGGAATTGGGGCTCTCCGATCAGGTCGATTTTATGACCGCGAGTTTGGCAAAA
ACATTTGCGTATCGTGCGGGGGTTATTTGGGCAAATAACAACGCGAATCAATGTATTCCTTTTGTGGGCTATCCGGCGAT
ATTCAGCTCGACGATATTACCGTATGAAATAGCCGCATTAGAAGCCACATTAGAGGTCATTAAATCGGCCAATGATCGTC
GCAAGAATTTATTTCGCAATGCACAACTATTATCACAAGGATTAAATAAAATTGGTATTCACATTCGCAGCCAATCCCAA
ATTATCGCATTGGAAACAGGCGATGAAAAAAATACAGAAAAGGTCCGTGATTATTTAGAAGACAATGGCGTTTTCGGCGC
CGTATTTTGTCGACCGGCCACCTCGAAAACGAAAAATATTATTCGCTTGTCATTAACCAGTGCCGTTACGGAACAACAGA
TCGACCGCATTTTGTCGGTGTGTCAAAGCGCGGTAAAACGGGGGGATATGATCTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.571

97.964

0.672