Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   IUJ52_RS10790 Genome accession   NZ_CP064379
Coordinates   2295663..2296280 (-) Length   205 a.a.
NCBI ID   WP_014204466.1    Uniprot ID   A0A0Q2MAY4
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2290663..2301280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS10780 (IUJ52_10775) aceF 2291952..2293844 (+) 1893 WP_004729064.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  IUJ52_RS10785 (IUJ52_10780) lpdA 2294117..2295544 (+) 1428 WP_004729062.1 dihydrolipoyl dehydrogenase -
  IUJ52_RS10790 (IUJ52_10785) opaR 2295663..2296280 (-) 618 WP_014204466.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  IUJ52_RS10795 (IUJ52_10790) hpt 2296601..2297128 (+) 528 WP_004729056.1 hypoxanthine phosphoribosyltransferase -
  IUJ52_RS10800 (IUJ52_10795) can 2297176..2297844 (-) 669 WP_004729053.1 carbonate dehydratase -
  IUJ52_RS10805 (IUJ52_10800) - 2298187..2299104 (+) 918 WP_004729051.1 ABC transporter ATP-binding protein -
  IUJ52_RS10810 (IUJ52_10805) - 2299110..2299880 (+) 771 WP_004729049.1 ABC transporter permease -
  IUJ52_RS10815 (IUJ52_10810) panC 2299955..2300836 (-) 882 WP_004729048.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23851.20 Da        Isoelectric Point: 6.2312

>NTDB_id=501455 IUJ52_RS10790 WP_014204466.1 2295663..2296280(-) (opaR) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFANRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDMHAKDNIANITREMVRLANDDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLLKNMFSKAIERGEVCEQHDA
DDLATLFHGVCYSLFVQANRVRDEGYMQKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=501455 IUJ52_RS10790 WP_014204466.1 2295663..2296280(-) (opaR) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGGACGCATCGATAGAGAAACGCCCTAGAACGCGGCTATCTCCCCAAAAACGTAAACTTCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAATCGTGGGATTGGTCGTGGCGGTCACGCCGACATCGCAGAAATTGCTCAAGTTTCTGTCGCGACCG
TATTCAACTATTTCCCAACGCGCGAAGATTTGGTCGACGACGTGCTCACTTACGTGGTTCGTCAGTTCTCCAACTTCCTG
ACCGACAACATCGATCTGGACATGCACGCAAAAGACAACATTGCGAACATCACCCGCGAAATGGTTCGTCTGGCCAATGA
CGATTGCCACTGGCTGAAAGTGTGGTTTGAGTGGAGCGCATCCACCCGTGATGAAGTGTGGCCCCTGTTTGTGTCGAGCA
ACCGCACCAACCAACTGCTGCTGAAAAACATGTTCTCAAAAGCGATTGAACGGGGTGAAGTATGCGAGCAACACGATGCA
GATGATCTGGCGACGCTGTTCCATGGCGTGTGCTATTCCCTGTTTGTGCAAGCAAACCGTGTACGCGATGAAGGCTACAT
GCAGAAGCTGGTGAAGAGCTACCTCGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2MAY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.198

98.537

0.79
  hapR Vibrio cholerae C6706

77.723

98.537

0.766
  hapR Vibrio cholerae strain A1552

77.723

98.537

0.766