Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IUJ52_RS09220 Genome accession   NZ_CP064379
Coordinates   1963861..1964535 (-) Length   224 a.a.
NCBI ID   WP_232281756.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1958861..1969535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS09190 (IUJ52_09185) gspL 1959082..1960293 (+) 1212 WP_004728456.1 type II secretion system protein GspL -
  IUJ52_RS09195 (IUJ52_09190) - 1960303..1960812 (+) 510 WP_004728457.1 type II secretion system protein GspM -
  IUJ52_RS09200 (IUJ52_09195) - 1960809..1961567 (+) 759 WP_004728459.1 type II secretion system protein N -
  IUJ52_RS09205 (IUJ52_09200) cysQ 1961628..1962455 (-) 828 WP_004728460.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  IUJ52_RS09210 (IUJ52_09205) nudE 1962479..1963027 (-) 549 WP_004728462.1 ADP compounds hydrolase NudE -
  IUJ52_RS09215 (IUJ52_09210) nfuA 1963173..1963760 (-) 588 WP_038152592.1 Fe-S biogenesis protein NfuA -
  IUJ52_RS09220 (IUJ52_09215) comF 1963861..1964535 (-) 675 WP_232281756.1 phosphoribosyltransferase family protein Machinery gene
  IUJ52_RS09225 (IUJ52_09220) bioH 1964649..1965419 (+) 771 WP_004728468.1 pimeloyl-ACP methyl ester esterase BioH -
  IUJ52_RS09230 (IUJ52_09225) - 1965548..1966018 (+) 471 WP_004728470.1 hypothetical protein -
  IUJ52_RS09235 (IUJ52_09230) - 1966101..1968410 (-) 2310 WP_004728472.1 Tex family protein -
  IUJ52_RS09240 (IUJ52_09235) - 1968466..1969128 (-) 663 WP_004728474.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25160.28 Da        Isoelectric Point: 8.7090

>NTDB_id=501443 IUJ52_RS09220 WP_232281756.1 1963861..1964535(-) (comF) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MFSWLAPACQLCGLALHAPTKPRLCTACLAWYAPTPRCARCGLPCESATAQCGQCLSTPPPWHQLVCVGDYRFPLSHSVH
QLKYQRQFWQARPLAALLAPRITTPAPLLTCVPLHWRRQLRRGFNQSDVLARQLAQHLGCEYDPQLFSRPHATVPQHGLD
KAQRRRNLNRAFVLNHVPCQQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 675 bp        

>NTDB_id=501443 IUJ52_RS09220 WP_232281756.1 1963861..1964535(-) (comF) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGTTTTCCTGGTTGGCACCCGCCTGCCAACTGTGCGGCCTAGCGCTACACGCGCCGACCAAACCCAGGCTGTGTACGGC
ATGTCTGGCGTGGTATGCCCCCACACCGCGCTGCGCTCGCTGCGGCCTGCCGTGTGAAAGTGCCACCGCGCAGTGCGGCC
AGTGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTCTGCGTGGGCGATTACCGCTTTCCTCTCAGCCACAGCGTGCAT
CAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCACGGCCCCTGGCTGCATTGCTCGCGCCCAGAATCACCACGCCTGCGCC
GCTGCTCACGTGCGTGCCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCAATCAAAGTGATGTGTTGGCACGTCAGC
TCGCCCAGCATTTGGGCTGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCACGCCACGGTGCCACAACACGGCTTGGAC
AAAGCGCAGCGGCGACGCAACCTCAATCGTGCCTTTGTGTTAAACCACGTGCCGTGCCAGCAACACGTGGCGATTGTCGA
CGATGTCGTCACCACCGGCAGCACCGTACGGCAATTATGCAATTTACTACTTGAAGTGGGCGTCAAAAGCCTCGATATTT
ACTGTATCTGCCGCACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(130-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

67.273

98.214

0.661
  comF Vibrio campbellii strain DS40M4

49.13

100

0.504
  comF Haemophilus influenzae 86-028NP

36.771

99.554

0.366
  comF Haemophilus influenzae Rd KW20

35.065

100

0.362