Detailed information NTG0501432

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IUJ52_RS05835
• Genome accession: NZ_CP064379
• Coordinates: 1260157..1261146 (-)
• Length: 329 a.a.
• NCBI ID: WP_004723838.1
• Uniprot ID: A0A0Q2V080
• Organism: Vibrio furnissii strain PartQ-Vfurnissii-RM8376
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1255157..1266146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUJ52_RS05815 (IUJ52_05805)	recX	1255164..1255634 (-)	471	WP_004723847.1	recombination regulator RecX	-
IUJ52_RS05820 (IUJ52_05810)	recA	1255729..1256781 (-)	1053	WP_004723845.1	recombinase RecA	Machinery gene
IUJ52_RS05825 (IUJ52_05815)	pncC	1256948..1257442 (-)	495	WP_004723843.1	nicotinamide-nucleotide amidase	-
IUJ52_RS05830 (IUJ52_05820)	mutS	1257527..1260088 (+)	2562	WP_004723840.1	DNA mismatch repair protein MutS	-
IUJ52_RS05835 (IUJ52_05825)	rpoS	1260157..1261146 (-)	990	WP_004723838.1	RNA polymerase sigma factor RpoS	Regulator
IUJ52_RS05840 (IUJ52_05830)	nlpD	1261219..1262154 (-)	936	WP_004723836.1	murein hydrolase activator NlpD	-
IUJ52_RS05845 (IUJ52_05835)	-	1262154..1262780 (-)	627	WP_014205779.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IUJ52_RS05850 (IUJ52_05840)	surE	1262773..1263540 (-)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
IUJ52_RS05855 (IUJ52_05845)	truD	1263533..1264579 (-)	1047	WP_004723830.1	tRNA pseudouridine(13) synthase TruD	-
IUJ52_RS05860 (IUJ52_05850)	ispF	1264611..1265087 (-)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IUJ52_RS05865 (IUJ52_05855)	ispD	1265137..1265850 (-)	714	WP_004723825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IUJ52_RS05870 (IUJ52_05860)	ftsB	1265847..1266131 (-)	285	WP_004723824.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37741.44 Da
• Isoelectric Point: 4.4379

>NTDB_id=501432 IUJ52_RS05835 WP_004723838.1 1260157..1261146(-) (rpoS) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MSISNTATKVEEFEFDSEAVNNAATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=501432 IUJ52_RS05835 WP_004723838.1 1260157..1261146(-) (rpoS) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAATCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCCACGAAAAGCCTGGATGCCA
CTCAGATGTATCTGAGCGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGCATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATCTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGACCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCCCTGATGAACCAGACTCGTACG
ATTCGTTTACCAATTCATGTGGTGAAAGAACTGAACATTTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGACCA
CGAACCGACCGCAGAAGAAATTGCTGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGTGATGGTGACAAAGCATTGCTCGATATCATTCCTGATATCAACAATTCC
GACCCTGAAGTCTCCACACAGGATGACGATATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAATCCGAAACAGAA
AGAAGTGCTGGCTCGCCGTTTTGGCTTGTTAGGGTATGAACCATCAACACTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGTTTGCGCCGTCTGAGAGAAATCCTGATGAAACAGGGTTTGAACATG
GAATCGCTGTTTAATGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A0A0Q2V080

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894