Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   A7A14_RS14650 Genome accession   NZ_CP076270
Coordinates   3000249..3001241 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain Ceylon31     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2995249..3006241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A14_RS14625 (A7A14_14590) ygbN 2995904..2997268 (+) 1365 WP_000104439.1 GntP family transporter -
  A7A14_RS14630 (A7A14_14595) - 2997307..2997543 (-) 237 WP_000562984.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  A7A14_RS14635 (A7A14_14600) - 2997554..2998981 (-) 1428 WP_000863235.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  A7A14_RS14640 (A7A14_14605) - 2998981..2999574 (-) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  A7A14_RS14645 (A7A14_14610) - 2999721..3000128 (+) 408 WP_001208072.1 MarR family winged helix-turn-helix transcriptional regulator -
  A7A14_RS14650 (A7A14_14615) rpoS 3000249..3001241 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  A7A14_RS14655 (A7A14_14620) nlpD 3001304..3002398 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  A7A14_RS14660 (A7A14_14625) pcm 3002583..3003209 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  A7A14_RS14665 (A7A14_14630) surE 3003203..3003964 (-) 762 WP_001349984.1 5'/3'-nucleotidase SurE -
  A7A14_RS14670 (A7A14_14635) truD 3003945..3004994 (-) 1050 WP_000568924.1 tRNA pseudouridine(13) synthase TruD -
  A7A14_RS14675 (A7A14_14640) ispF 3004991..3005470 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  A7A14_RS14680 (A7A14_14645) ispD 3005470..3006180 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=501430 A7A14_RS14650 WP_000081550.1 3000249..3001241(-) (rpoS) [Escherichia coli strain Ceylon31]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=501430 A7A14_RS14650 WP_000081550.1 3000249..3001241(-) (rpoS) [Escherichia coli strain Ceylon31]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715