Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   A7A14_RS10655 Genome accession   NZ_CP076270
Coordinates   2163541..2164197 (-) Length   218 a.a.
NCBI ID   WP_151316850.1    Uniprot ID   -
Organism   Escherichia coli strain Ceylon31     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2158541..2169197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A14_RS10615 (A7A14_10595) - 2159050..2159310 (+) 261 WP_000488108.1 ogr/Delta-like zinc finger family protein -
  A7A14_RS10620 (A7A14_10600) - 2159501..2159641 (+) 141 WP_000078920.1 Hok/Gef family protein -
  A7A14_RS10625 (A7A14_10605) - 2159831..2160112 (-) 282 WP_071529678.1 hypothetical protein -
  A7A14_RS10645 (A7A14_10625) pgsA 2161107..2161655 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  A7A14_RS10650 (A7A14_10630) uvrC 2161712..2163544 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  A7A14_RS10655 (A7A14_10635) letA 2163541..2164197 (-) 657 WP_151316850.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  A7A14_RS24450 - 2164339..2164410 (+) 72 Protein_2102 transcriptional regulator -
  A7A14_RS10660 (A7A14_10640) yecU 2164493..2164669 (+) 177 WP_000590347.1 protein YecU -
  A7A14_RS10665 (A7A14_10645) yecF 2164656..2164880 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  A7A14_RS10670 (A7A14_10650) sdiA 2164947..2165669 (-) 723 WP_001154271.1 transcriptional regulator SdiA -
  A7A14_RS10675 (A7A14_10655) tcyN 2165899..2166651 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  A7A14_RS10680 (A7A14_10660) tcyL 2166648..2167316 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  A7A14_RS10685 (A7A14_10665) dcyD 2167331..2168317 (-) 987 WP_001128219.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23876.61 Da        Isoelectric Point: 6.9614

>NTDB_id=501415 A7A14_RS10655 WP_151316850.1 2163541..2164197(-) (letA) [Escherichia coli strain Ceylon31]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHPAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=501415 A7A14_RS10655 WP_151316850.1 2163541..2164197(-) (letA) [Escherichia coli strain Ceylon31]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCCGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-202)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482