Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   IUJ54_RS08480 Genome accession   NZ_CP064378
Coordinates   1947358..1947807 (+) Length   149 a.a.
NCBI ID   WP_010946364.1    Uniprot ID   Q5ZXV4
Organism   Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1942358..1952807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ54_RS08470 (IUJ54_08450) - 1943312..1943824 (+) 513 WP_010946366.1 pilus assembly protein -
  IUJ54_RS08475 (IUJ54_08455) - 1943837..1947346 (+) 3510 WP_011213223.1 PilC/PilY family type IV pilus protein -
  IUJ54_RS08480 (IUJ54_08460) pilE 1947358..1947807 (+) 450 WP_010946364.1 type IV pilin protein Machinery gene
  IUJ54_RS08485 (IUJ54_08465) comEC 1947885..1950092 (+) 2208 WP_010946363.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IUJ54_RS08490 (IUJ54_08470) - 1950118..1951425 (-) 1308 WP_011213222.1 tetratricopeptide repeat protein -
  IUJ54_RS08495 (IUJ54_08475) - 1951626..1952003 (-) 378 WP_010946361.1 hypothetical protein -
  IUJ54_RS08500 (IUJ54_08480) - 1952140..1952532 (+) 393 WP_010946360.1 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16296.57 Da        Isoelectric Point: 7.6922

>NTDB_id=501404 IUJ54_RS08480 WP_010946364.1 1947358..1947807(+) (pilE) [Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376]
MLSHVHFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=501404 IUJ54_RS08480 WP_010946364.1 1947358..1947807(+) (pilE) [Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376]
ATGCTCAGTCATGTACATTTTATGAAGAATAGCCGTATGAAACAATCCGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGCATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGTTATTCACAGAATTTTTCTTATGCTGCGGCGTGTGGCGCC
TTACCAGCATTTCCTCAAACAACGCCGAACGGGTACTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACCTT
AACTGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAACCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCCGCTAATGCGCAACCAGAATGCTGGAATCCCGGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-38)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(39-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZXV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

100

100

1
  pilE Legionella pneumophila strain ERS1305867

100

100

1