Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   IUJ54_RS01525 Genome accession   NZ_CP064378
Coordinates   363549..364106 (+) Length   185 a.a.
NCBI ID   WP_010947711.1    Uniprot ID   Q5ZU13
Organism   Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358549..369106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ54_RS01500 (IUJ54_01505) secF 359756..360673 (+) 918 WP_010947716.1 protein translocase subunit SecF -
  IUJ54_RS01505 (IUJ54_01510) - 360846..361187 (-) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  IUJ54_RS01510 (IUJ54_01515) hisC 361224..362333 (-) 1110 WP_015444344.1 histidinol-phosphate transaminase -
  IUJ54_RS01515 (IUJ54_01520) lpp1978 362493..362807 (+) 315 WP_010947713.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  IUJ54_RS01520 (IUJ54_01525) lpp1977 362746..363552 (+) 807 WP_010947712.1 hypothetical protein Machinery gene
  IUJ54_RS01525 (IUJ54_01530) lpp1976 363549..364106 (+) 558 WP_010947711.1 hypothetical protein Machinery gene
  IUJ54_RS01530 (IUJ54_01535) - 364216..365409 (+) 1194 WP_010947710.1 murein transglycosylase A -
  IUJ54_RS01535 (IUJ54_01540) - 365526..366386 (-) 861 WP_015444347.1 polysaccharide deacetylase family protein -
  IUJ54_RS01540 (IUJ54_01545) - 366878..367378 (+) 501 WP_015444348.1 hypothetical protein -
  IUJ54_RS01545 (IUJ54_01550) - 367458..368108 (+) 651 WP_010947707.1 lysoplasmalogenase -
  IUJ54_RS01550 (IUJ54_01555) - 368327..368950 (+) 624 WP_025862380.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21533.91 Da        Isoelectric Point: 6.9393

>NTDB_id=501381 IUJ54_RS01525 WP_010947711.1 363549..364106(+) (lpp1976) [Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376]
MKKTDSGFILLMTLCITFLMSLLVLASLQQIFLQFKALNSQETFHQNFYQLEHWMMQLARSPLLYAGMDCYLQKDYGANK
IANELVNNKGCVLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESTVMQLRFIKLGSNLSSCPEG
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=501381 IUJ54_RS01525 WP_010947711.1 363549..364106(+) (lpp1976) [Legionella pneumophila subsp. pneumophila strain PartS-Lpneumophila-RM8376]
ATGAAAAAAACCGATTCCGGTTTCATTCTTTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAGCAGATATTCTTGCAATTCAAAGCACTCAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCAACTCGCTCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATCTGCAAAAGGATTATGGAGCTAATAAA
ATAGCAAACGAGTTAGTTAACAATAAAGGATGTGTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
GAATGAATTTTCTTGTTTGGTTCTTAATAAGGATGGGCAAAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATCTACTGTCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAGGGG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZU13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila str. Paris

95.676

100

0.957
  lpp1976 Legionella pneumophila strain ERS1305867

95.676

100

0.957