Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A7A16_RS13990 Genome accession   NZ_CP076268
Coordinates   2878488..2879225 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain D217-5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2873488..2884225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A16_RS13975 (A7A16_13950) clpC 2873942..2876515 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  A7A16_RS13980 (A7A16_13955) yfiH 2876645..2877376 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  A7A16_RS13985 (A7A16_13960) rluD 2877373..2878353 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A7A16_RS13990 (A7A16_13965) comL 2878488..2879225 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A7A16_RS13995 (A7A16_13970) raiA 2879496..2879837 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A7A16_RS14000 (A7A16_13975) pheL 2879941..2879988 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  A7A16_RS14005 (A7A16_13980) pheA 2880087..2881247 (+) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  A7A16_RS14010 (A7A16_13985) tyrA 2881290..2882411 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A7A16_RS14015 (A7A16_13990) aroF 2882422..2883492 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A7A16_RS14020 (A7A16_13995) yfiL 2883702..2884067 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=501348 A7A16_RS13990 WP_000197686.1 2878488..2879225(+) (comL) [Escherichia coli strain D217-5]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=501348 A7A16_RS13990 WP_000197686.1 2878488..2879225(+) (comL) [Escherichia coli strain D217-5]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376