Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   IUJ45_RS09220 Genome accession   NZ_CP064367
Coordinates   1823854..1824318 (+) Length   154 a.a.
NCBI ID   WP_010981251.1    Uniprot ID   -
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1818854..1829318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS09220 (IUJ45_09340) comE 1823854..1824318 (+) 465 WP_010981251.1 helix-hairpin-helix domain-containing protein Machinery gene
  IUJ45_RS09225 (IUJ45_09345) - 1824249..1824869 (-) 621 WP_002247026.1 HK97 family phage prohead protease -
  IUJ45_RS09230 (IUJ45_09350) - 1824981..1825574 (-) 594 WP_002246348.1 hypothetical protein -
  IUJ45_RS09235 (IUJ45_09355) prmB 1825719..1826618 (+) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  IUJ45_RS11005 - 1826631..1826759 (+) 129 WP_002212671.1 hypothetical protein -
  IUJ45_RS09240 (IUJ45_09360) - 1826899..1827636 (+) 738 WP_002216708.1 toxin-antitoxin system YwqK family antitoxin -
  IUJ45_RS09245 (IUJ45_09365) - 1827762..1828034 (+) 273 WP_002234162.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16457.69 Da        Isoelectric Point: 10.7894

>NTDB_id=501192 IUJ45_RS09220 WP_010981251.1 1823854..1824318(+) (comE) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=501192 IUJ45_RS09220 WP_010981251.1 1823854..1824318(+) (comE) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74