Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A7A18_RS14345 Genome accession   NZ_CP076262
Coordinates   2951228..2951965 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 0-4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2946228..2956965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A18_RS14330 (A7A18_14290) clpC 2946682..2949255 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  A7A18_RS14335 (A7A18_14295) yfiH 2949385..2950116 (-) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  A7A18_RS14340 (A7A18_14300) rluD 2950113..2951093 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A7A18_RS14345 (A7A18_14305) comL 2951228..2951965 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A7A18_RS14350 (A7A18_14310) raiA 2952236..2952577 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A7A18_RS14355 (A7A18_14315) pheL 2952681..2952728 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A7A18_RS14360 (A7A18_14320) pheA 2952827..2953987 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  A7A18_RS14365 (A7A18_14325) tyrA 2954030..2955151 (-) 1122 WP_000225201.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A7A18_RS14370 (A7A18_14330) aroF 2955162..2956232 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A7A18_RS14375 (A7A18_14335) yfiL 2956442..2956807 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=501191 A7A18_RS14345 WP_000197686.1 2951228..2951965(+) (comL) [Escherichia coli strain 0-4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=501191 A7A18_RS14345 WP_000197686.1 2951228..2951965(+) (comL) [Escherichia coli strain 0-4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376