Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   IUJ45_RS07820 Genome accession   NZ_CP064367
Coordinates   1534216..1534680 (+) Length   154 a.a.
NCBI ID   WP_010981251.1    Uniprot ID   -
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1535370..1536023 1534216..1534680 flank 690


Gene organization within MGE regions


Location: 1534216..1536023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS07820 (IUJ45_07935) comE 1534216..1534680 (+) 465 WP_010981251.1 helix-hairpin-helix domain-containing protein Machinery gene
  IUJ45_RS07825 - 1534792..1535250 (+) 459 WP_002233491.1 hypothetical protein -
  IUJ45_RS07830 (IUJ45_07950) - 1535370..1536023 (+) 654 WP_002249241.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16457.69 Da        Isoelectric Point: 10.7894

>NTDB_id=501183 IUJ45_RS07820 WP_010981251.1 1534216..1534680(+) (comE) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=501183 IUJ45_RS07820 WP_010981251.1 1534216..1534680(+) (comE) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74