Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A7A18_RS11340 Genome accession   NZ_CP076262
Coordinates   2300151..2301578 (+) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain 0-4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2295151..2306578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A18_RS11300 (A7A18_11270) yeeW 2295336..2295530 (+) 195 WP_000988600.1 DUF5983 family protein -
  A7A18_RS11305 (A7A18_11275) - 2295564..2295656 (+) 93 Protein_2224 DUF957 domain-containing protein -
  A7A18_RS24900 (A7A18_11280) - 2295945..2296082 (-) 138 Protein_2225 transposase domain-containing protein -
  A7A18_RS11315 (A7A18_11285) - 2296145..2296327 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  A7A18_RS11320 (A7A18_11290) tmaR 2296428..2296757 (-) 330 WP_000450409.1 DUF496 family protein -
  A7A18_RS11325 (A7A18_11295) yeeA 2296929..2297987 (-) 1059 WP_001200892.1 FUSC family protein -
  A7A18_RS11330 (A7A18_11300) sbmC 2298185..2298658 (-) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  A7A18_RS11335 (A7A18_11305) dacD 2298776..2299942 (-) 1167 WP_001383231.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  A7A18_RS11340 (A7A18_11310) sbcB 2300151..2301578 (+) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  A7A18_RS11345 (A7A18_11315) tsuB 2301621..2301848 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  A7A18_RS11350 (A7A18_11320) tsuA 2301862..2302920 (-) 1059 WP_000492323.1 thiosulfate utilization transporter TsuA/YeeE -
  A7A18_RS11355 (A7A18_11325) plaP 2303099..2304457 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  A7A18_RS11360 (A7A18_11330) yoeI 2304447..2304509 (-) 63 WP_010723108.1 membrane protein YoeI -
  A7A18_RS11365 (A7A18_11335) yeeY 2304724..2305653 (-) 930 WP_000803341.1 LysR substrate-binding domain-containing protein -
  A7A18_RS11370 (A7A18_11340) yeeZ 2305699..2306523 (-) 825 WP_000754755.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=501183 A7A18_RS11340 WP_000980539.1 2300151..2301578(+) (sbcB) [Escherichia coli strain 0-4]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=501183 A7A18_RS11340 WP_000980539.1 2300151..2301578(+) (sbcB) [Escherichia coli strain 0-4]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGACATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581