Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | IUJ45_RS06545 | Genome accession | NZ_CP064367 |
| Coordinates | 1283550..1284014 (+) | Length | 154 a.a. |
| NCBI ID | WP_010981060.1 | Uniprot ID | - |
| Organism | Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1283715..1303089 | 1283550..1284014 | flank | -299 |
Gene organization within MGE regions
Location: 1283550..1303089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUJ45_RS06545 (IUJ45_06640) | comE | 1283550..1284014 (+) | 465 | WP_010981060.1 | ComEA family DNA-binding protein | Machinery gene |
| IUJ45_RS06550 (IUJ45_06645) | dnaJ | 1284284..1285405 (+) | 1122 | WP_002215274.1 | molecular chaperone DnaJ | - |
| IUJ45_RS06555 (IUJ45_06650) | - | 1285600..1287618 (+) | 2019 | WP_002236572.1 | OPT family oligopeptide transporter | - |
| IUJ45_RS06560 (IUJ45_06655) | rfbC | 1287661..1288218 (-) | 558 | WP_164732759.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| IUJ45_RS06565 (IUJ45_06660) | rfbA | 1288272..1289138 (-) | 867 | WP_002221803.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| IUJ45_RS06570 (IUJ45_06665) | rfbB | 1289244..1290269 (-) | 1026 | WP_002236574.1 | dTDP-glucose 4,6-dehydratase | - |
| IUJ45_RS06575 (IUJ45_06670) | galE | 1290385..1291404 (-) | 1020 | WP_082308721.1 | UDP-glucose 4-epimerase GalE | - |
| IUJ45_RS06580 (IUJ45_06675) | - | 1291449..1292312 (-) | 864 | WP_002236576.1 | galactosyltransferase-related protein | - |
| IUJ45_RS06585 (IUJ45_06680) | - | 1292314..1293057 (-) | 744 | WP_002236577.1 | YqiA/YcfP family alpha/beta fold hydrolase | - |
| IUJ45_RS06590 (IUJ45_06685) | - | 1293130..1294767 (-) | 1638 | WP_002236578.1 | stealth family protein | - |
| IUJ45_RS06595 (IUJ45_06690) | wecB | 1294769..1295887 (-) | 1119 | WP_002236579.1 | non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase | - |
| IUJ45_RS06600 (IUJ45_06695) | ctrA | 1296106..1297269 (+) | 1164 | WP_002236580.1 | capsule polysaccharide export outer membrane protein CtrA | - |
| IUJ45_RS06605 (IUJ45_06700) | - | 1297284..1298447 (+) | 1164 | WP_002236581.1 | capsule polysaccharide export inner-membrane protein CtrB | - |
| IUJ45_RS06610 (IUJ45_06705) | - | 1298447..1299244 (+) | 798 | WP_002236582.1 | ABC transporter permease | - |
| IUJ45_RS06615 (IUJ45_06710) | - | 1299241..1299891 (+) | 651 | WP_002218516.1 | ABC transporter ATP-binding protein | - |
| IUJ45_RS06620 (IUJ45_06715) | - | 1299955..1302228 (+) | 2274 | WP_002239407.1 | Tex family protein | - |
| IUJ45_RS06625 (IUJ45_06720) | dcm | 1302259..1303089 (+) | 831 | WP_002215283.1 | DNA cytosine methyltransferase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16529.75 Da Isoelectric Point: 10.6993
>NTDB_id=501178 IUJ45_RS06545 WP_010981060.1 1283550..1284014(+) (comE) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK
Nucleotide
Download Length: 465 bp
>NTDB_id=501178 IUJ45_RS06545 WP_010981060.1 1283550..1284014(+) (comE) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAA
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
94.262 |
79.221 |
0.747 |
| comE | Neisseria gonorrhoeae MS11 |
94.262 |
79.221 |
0.747 |
| comE | Neisseria gonorrhoeae MS11 |
94.262 |
79.221 |
0.747 |
| comE | Neisseria gonorrhoeae MS11 |
94.262 |
79.221 |
0.747 |