Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IUJ45_RS04400 Genome accession   NZ_CP064367
Coordinates   844861..845406 (+) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 839861..850406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS04380 (IUJ45_04440) - 839930..842326 (-) 2397 WP_002219786.1 penicillin-binding protein 1A -
  IUJ45_RS04385 (IUJ45_04445) - 842478..843593 (+) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  IUJ45_RS04390 (IUJ45_04450) pilN 843596..844195 (+) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  IUJ45_RS04395 (IUJ45_04455) pilO 844196..844843 (+) 648 WP_002214521.1 type 4a pilus biogenesis protein PilO -
  IUJ45_RS04400 (IUJ45_04460) pilP 844861..845406 (+) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  IUJ45_RS04405 (IUJ45_04465) pilQ 845425..847734 (+) 2310 WP_002261352.1 type IV pilus secretin PilQ Machinery gene
  IUJ45_RS04410 (IUJ45_04470) - 848912..849424 (+) 513 WP_002222978.1 shikimate kinase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=501168 IUJ45_RS04400 WP_002214522.1 844861..845406(+) (pilP) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=501168 IUJ45_RS04400 WP_002214522.1 844861..845406(+) (pilP) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1