Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IUJ45_RS03200 Genome accession   NZ_CP064367
Coordinates   599105..599908 (+) Length   267 a.a.
NCBI ID   WP_002221259.1    Uniprot ID   Q9JVB7
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 594105..604908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS03180 (IUJ45_03230) lptE 595013..595492 (-) 480 WP_002214127.1 LPS assembly lipoprotein LptE -
  IUJ45_RS03185 (IUJ45_03235) pgeF 595544..596323 (-) 780 WP_002246066.1 peptidoglycan editing factor PgeF -
  IUJ45_RS03190 (IUJ45_03240) - 596882..597829 (+) 948 WP_002246064.1 bile acid:sodium symporter family protein -
  IUJ45_RS03195 (IUJ45_03245) rluD 597982..599106 (-) 1125 WP_002246063.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IUJ45_RS03200 (IUJ45_03250) comL 599105..599908 (+) 804 WP_002221259.1 outer membrane protein assembly factor BamD Machinery gene
  IUJ45_RS03205 (IUJ45_03255) comA 599966..602185 (-) 2220 WP_153063192.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30808.83 Da        Isoelectric Point: 8.9351

>NTDB_id=501162 IUJ45_RS03200 WP_002221259.1 599105..599908(+) (comL) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=501162 IUJ45_RS03200 WP_002221259.1 599105..599908(+) (comL) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAGCTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCGCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAAGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTTCACCCGCAACACCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCCAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATGTCGGTGGCGCGCTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATTATCGGCAGCTACCAAAATACACGCTATG
TCGAAGAATCGCTCGCCATCTTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCTTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JVB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.502

100

0.985
  comL Neisseria meningitidis MC58

96.255

100

0.963