Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IUJ41_RS08465 Genome accession   NZ_CP064365
Coordinates   1694383..1694778 (+) Length   131 a.a.
NCBI ID   WP_001836307.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PartF-Saureus-RM8376     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1689383..1699778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ41_RS08435 (IUJ41_08400) - 1690641..1691045 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  IUJ41_RS08440 (IUJ41_08405) - 1691383..1691475 (+) 93 WP_001790611.1 hypothetical protein -
  IUJ41_RS08445 (IUJ41_08410) - 1691607..1691840 (+) 234 WP_000384523.1 DUF1146 family protein -
  IUJ41_RS08450 (IUJ41_08415) murA 1691951..1693216 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IUJ41_RS08455 (IUJ41_08420) fabZ 1693250..1693690 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IUJ41_RS08460 (IUJ41_08425) - 1693749..1694189 (-) 441 WP_000846746.1 YwpF-like family protein -
  IUJ41_RS08465 (IUJ41_08430) ssb 1694383..1694778 (+) 396 WP_001836307.1 single-stranded DNA-binding protein Machinery gene
  IUJ41_RS08470 (IUJ41_08435) sceD 1695167..1695862 (+) 696 WP_001836306.1 lytic transglycosylase SceD -
  IUJ41_RS08475 (IUJ41_08440) - 1695995..1697641 (-) 1647 WP_000277738.1 IS1182-like element ISSau3 family transposase -
  IUJ41_RS08480 (IUJ41_08445) tenA 1698226..1698915 (+) 690 WP_000396077.1 thiaminase II -
  IUJ41_RS08485 (IUJ41_08450) thiD 1698908..1699738 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=501126 IUJ41_RS08465 WP_001836307.1 1694383..1694778(+) (ssb) [Staphylococcus aureus strain PartF-Saureus-RM8376]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIRFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=501126 IUJ41_RS08465 WP_001836307.1 1694383..1694778(+) (ssb) [Staphylococcus aureus strain PartF-Saureus-RM8376]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAGATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985