Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IUJ46_RS06785 Genome accession   NZ_CP064364
Coordinates   1309766..1310257 (-) Length   163 a.a.
NCBI ID   WP_002983122.1    Uniprot ID   A0A9X8XIP7
Organism   Streptococcus pyogenes strain PartK-Spyogenes-RM8376     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1304766..1315257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ46_RS06770 (IUJ46_06735) - 1307496..1308440 (+) 945 WP_002983147.1 magnesium transporter CorA family protein -
  IUJ46_RS06775 (IUJ46_06740) - 1308573..1309229 (+) 657 WP_010922629.1 DUF1129 domain-containing protein -
  IUJ46_RS06780 (IUJ46_06745) rpsR 1309362..1309601 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  IUJ46_RS06785 (IUJ46_06750) ssb 1309766..1310257 (-) 492 WP_002983122.1 single-stranded DNA-binding protein Machinery gene
  IUJ46_RS06790 (IUJ46_06755) rpsF 1310279..1310569 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  IUJ46_RS06795 (IUJ46_06760) - 1310742..1311035 (-) 294 WP_002983113.1 hypothetical protein -
  IUJ46_RS06800 (IUJ46_06765) mutY 1311203..1312357 (+) 1155 WP_015055997.1 A/G-specific adenine glycosylase -
  IUJ46_RS06805 (IUJ46_06770) - 1312433..1313020 (+) 588 WP_010922631.1 helix-turn-helix transcriptional regulator -
  IUJ46_RS06810 (IUJ46_06775) trxA 1313072..1313386 (-) 315 WP_001162959.1 thioredoxin -
  IUJ46_RS06815 (IUJ46_06780) - 1313467..1313967 (-) 501 WP_015055998.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17981.76 Da        Isoelectric Point: 4.8894

>NTDB_id=501082 IUJ46_RS06785 WP_002983122.1 1309766..1310257(-) (ssb) [Streptococcus pyogenes strain PartK-Spyogenes-RM8376]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=501082 IUJ46_RS06785 WP_002983122.1 1309766..1310257(-) (ssb) [Streptococcus pyogenes strain PartK-Spyogenes-RM8376]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362