Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IUJ42_RS08180 Genome accession   NZ_CP064359
Coordinates   1730906..1731301 (-) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain PartG-Sepidermidis-RM8376     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1725906..1736301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ42_RS08155 (IUJ42_08185) thiE 1726647..1727285 (-) 639 WP_002505076.1 thiamine phosphate synthase -
  IUJ42_RS08160 (IUJ42_08190) thiM 1727291..1728079 (-) 789 WP_002469583.1 hydroxyethylthiazole kinase -
  IUJ42_RS08165 (IUJ42_08195) thiD 1728072..1728893 (-) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IUJ42_RS08170 (IUJ42_08200) tenA 1728886..1729575 (-) 690 WP_001829894.1 thiaminase II -
  IUJ42_RS08175 (IUJ42_08205) - 1729859..1730518 (-) 660 WP_001829904.1 transglycosylase family protein -
  IUJ42_RS08180 (IUJ42_08210) ssb 1730906..1731301 (-) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  IUJ42_RS08185 (IUJ42_08215) - 1731492..1731932 (+) 441 WP_001829935.1 YwpF-like family protein -
  IUJ42_RS08190 (IUJ42_08220) fabZ 1732250..1732687 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IUJ42_RS08195 (IUJ42_08225) murA 1732721..1733986 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IUJ42_RS08200 (IUJ42_08230) - 1734096..1734329 (-) 234 WP_002456242.1 DUF1146 family protein -
  IUJ42_RS08205 (IUJ42_08235) - 1734478..1734882 (-) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=501043 IUJ42_RS08180 WP_002457121.1 1730906..1731301(-) (ssb) [Staphylococcus epidermidis strain PartG-Sepidermidis-RM8376]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=501043 IUJ42_RS08180 WP_002457121.1 1730906..1731301(-) (ssb) [Staphylococcus epidermidis strain PartG-Sepidermidis-RM8376]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733