Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IS178_RS22370 Genome accession   NZ_CP064354
Coordinates   4916820..4917227 (-) Length   135 a.a.
NCBI ID   WP_016782526.1    Uniprot ID   A0A9Q5AXM1
Organism   Pseudomonas fragi strain NL20W     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4911820..4922227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS178_RS22355 (IS178_22355) - 4913751..4915808 (-) 2058 WP_016782523.1 methyl-accepting chemotaxis protein -
  IS178_RS22360 (IS178_22360) - 4915850..4916389 (-) 540 WP_016782524.1 chemotaxis protein CheW -
  IS178_RS22365 (IS178_22365) pilH 4916400..4916777 (-) 378 WP_016782525.1 twitching motility response regulator PilH -
  IS178_RS22370 (IS178_22370) pilG 4916820..4917227 (-) 408 WP_016782526.1 twitching motility response regulator PilG Regulator
  IS178_RS22375 (IS178_22375) gshB 4917568..4918521 (+) 954 WP_029611613.1 glutathione synthase -
  IS178_RS22380 (IS178_22380) - 4918599..4919498 (+) 900 WP_083369737.1 energy transducer TonB -
  IS178_RS22385 (IS178_22385) - 4919661..4920233 (+) 573 WP_016782529.1 YqgE/AlgH family protein -
  IS178_RS22390 (IS178_22390) ruvX 4920233..4920673 (+) 441 WP_016782530.1 Holliday junction resolvase RuvX -
  IS178_RS22395 (IS178_22395) pyrR 4920757..4921263 (+) 507 WP_016782531.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14879.50 Da        Isoelectric Point: 9.6809

>NTDB_id=501000 IS178_RS22370 WP_016782526.1 4916820..4917227(-) (pilG) [Pseudomonas fragi strain NL20W]
MQKHSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIVDHPPHIIFVDIMMPRLDGYQTCALIKSNRAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSRDELLSAIKAHVPAFNILPSAQ

Nucleotide


Download         Length: 408 bp        

>NTDB_id=501000 IS178_RS22370 WP_016782526.1 4916820..4917227(-) (pilG) [Pseudomonas fragi strain NL20W]
ATGCAAAAGCATTCCAGCGCCTTGAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCGCACCGCCGAAACGCTGCT
GAAAAACGTGGGCTGCGAGGTCATTACCGCCATCGATGGTTTCGATGCGCTGGCCAAGATTGTCGACCACCCTCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGTCTGGATGGTTATCAGACCTGCGCACTGATCAAGAGCAACCGGGCGTTCAAG
TCGATCCCCGTGATCATGCTGTCGTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGGATCGTGGGTTCTGATCAATT
TTTGACCAAACCGTTCAGTCGCGACGAATTGCTGAGCGCGATCAAGGCTCATGTGCCAGCCTTCAATATTCTACCCAGTG
CCCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72.441

94.074

0.681
  vicR Streptococcus mutans UA159

39.683

93.333

0.37