Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   IT766_RS11505 Genome accession   NZ_CP064350
Coordinates   2533380..2533970 (-) Length   196 a.a.
NCBI ID   WP_000157690.1    Uniprot ID   A0A366AJW1
Organism   Vibrio cholerae C6706     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2528380..2538970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT766_RS11485 (IT766_11485) aroB 2529307..2530392 (-) 1086 WP_000439805.1 3-dehydroquinate synthase -
  IT766_RS11490 (IT766_11490) aroK 2530420..2530944 (-) 525 WP_000818616.1 shikimate kinase AroK -
  IT766_RS11495 (IT766_11495) pilQ 2531131..2532846 (-) 1716 WP_000788426.1 type IV pilus secretin PilQ Machinery gene
  IT766_RS11500 (IT766_11500) pilP 2532872..2533390 (-) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  IT766_RS11505 (IT766_11505) pilO 2533380..2533970 (-) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  IT766_RS11510 (IT766_11510) pilN 2533963..2534547 (-) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  IT766_RS11515 (IT766_11515) pilM 2534537..2535553 (-) 1017 WP_000520444.1 type IV pilus assembly protein PilM Machinery gene
  IT766_RS11520 (IT766_11520) - 2535696..2538173 (+) 2478 WP_000668733.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22877.27 Da        Isoelectric Point: 4.4169

>NTDB_id=500930 IT766_RS11505 WP_000157690.1 2533380..2533970(-) (pilO) [Vibrio cholerae C6706]
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=500930 IT766_RS11505 WP_000157690.1 2533380..2533970(-) (pilO) [Vibrio cholerae C6706]
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(50-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366AJW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

100

100

1
  pilO Vibrio campbellii strain DS40M4

71.958

96.429

0.694