Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KE3_RS09865 Genome accession   NC_021900
Coordinates   1959746..1960840 (+) Length   364 a.a.
NCBI ID   WP_020917660.1    Uniprot ID   A0AB33APR8
Organism   Streptococcus lutetiensis 033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1954746..1965840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS09840 (KE3_2030) pgsA 1955162..1955716 (-) 555 WP_020917655.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KE3_RS09845 (KE3_2031) - 1955729..1956673 (-) 945 WP_020917656.1 helix-turn-helix domain-containing protein -
  KE3_RS09850 (KE3_2032) yfmH 1956739..1958028 (-) 1290 WP_020917657.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  KE3_RS09855 (KE3_2033) yfmF 1958029..1959273 (-) 1245 WP_020917658.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  KE3_RS09860 (KE3_2034) yaaA 1959360..1959743 (+) 384 WP_043895167.1 S4 domain-containing protein YaaA -
  KE3_RS09865 (KE3_2035) recF 1959746..1960840 (+) 1095 WP_020917660.1 DNA replication/repair protein RecF Machinery gene
  KE3_RS09870 (KE3_2036) - 1960906..1961772 (-) 867 WP_020917661.1 GRP family sugar transporter -
  KE3_RS09875 (KE3_2037) guaB 1962018..1963499 (-) 1482 WP_043895168.1 IMP dehydrogenase -
  KE3_RS09880 (KE3_2038) trpS 1963723..1964745 (-) 1023 WP_020917663.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42104.40 Da        Isoelectric Point: 8.2975

>NTDB_id=50091 KE3_RS09865 WP_020917660.1 1959746..1960840(+) (recF) [Streptococcus lutetiensis 033]
MWIQKIALKNYRNYLTNELEFFPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRSDKELIHFQEKELRVSGILQRSSGT
VPLEINLSSKGRVTKVNHLKQAKLSDYIGVMTVVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQR
NTYLKTAEKVDINFLAVLDEQLADFGSRVMEHRLDFVSNLEKEADRYHYAISNGLEHLKIRYLSSVPFQEKSEIKEYFLK
TLEKNRKRDIFKKNTGAGPHRDDLEFFINDMPANFGSQGQHRSLILSLKMAEIELIKNVTGDYPILLLDDVMSELDNYRQ
TELLKMIIAENVQTFITTTSLEHLSKLPEELKIFTVNQGTIEEN

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=50091 KE3_RS09865 WP_020917660.1 1959746..1960840(+) (recF) [Streptococcus lutetiensis 033]
ATGTGGATTCAAAAAATAGCCTTAAAAAATTATCGTAATTATTTAACCAATGAGCTTGAATTTTTTCCCGGGCTAAATGT
CTTTATCGGGAAAAACGCTCAAGGAAAAACAAATTTCTTAGAAGCTATTTATTTCTTATCTTTAACACGTAGCCACCGTA
CACGTTCCGACAAAGAGCTGATTCACTTTCAAGAAAAAGAACTTCGTGTCTCAGGTATTCTGCAACGCTCAAGTGGGACA
GTTCCTTTGGAAATCAATCTATCAAGTAAAGGACGAGTCACTAAAGTTAATCACCTCAAACAAGCTAAATTATCCGACTA
TATCGGAGTGATGACAGTCGTCTTATTTGCACCTGAAGATTTACAACTCATCAAAGGAGCTCCGAGTTTACGTCGTAAGT
TTATTGATATTGATTTAGGTCAAATCAAACCTATCTACCTATCTGATTTGTCTAATTACAATCATGTCCTTAAACAACGT
AACACTTATCTGAAGACCGCTGAAAAAGTTGACATCAACTTTTTAGCAGTCCTTGATGAGCAATTAGCTGATTTTGGTAG
TCGCGTAATGGAACATCGCTTAGATTTCGTCTCTAATCTCGAAAAAGAAGCCGACCGCTATCACTATGCCATCTCTAATG
GCCTAGAACATTTGAAAATTCGCTATCTATCATCTGTGCCATTCCAAGAAAAAAGTGAAATCAAAGAATACTTCTTAAAA
ACATTGGAAAAGAATCGCAAACGTGATATCTTCAAAAAAAATACTGGTGCTGGACCTCATCGTGATGATTTGGAATTTTT
CATCAATGACATGCCTGCCAATTTTGGTAGCCAAGGACAACACCGTAGTTTGATTTTATCTCTTAAGATGGCTGAAATTG
AACTCATTAAGAATGTCACTGGTGATTATCCAATTCTACTTCTTGACGATGTCATGAGTGAATTAGATAACTACCGACAA
ACAGAATTGTTAAAAATGATTATTGCTGAAAATGTTCAAACCTTTATCACAACGACAAGTCTTGAACACCTTTCTAAACT
TCCAGAAGAGTTGAAAATTTTCACTGTTAATCAAGGAACTATTGAAGAAAACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33APR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.11

100

0.651
  recF Bacillus subtilis subsp. subtilis str. 168

44.715

100

0.453

Multiple sequence alignment