Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JKN65_RS11560 Genome accession   NZ_CP076241
Coordinates   2260944..2261600 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli O157:H7 strain Vac_07.1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2255944..2266600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKN65_RS11530 (JKN65_11455) dcyD 2256823..2257809 (+) 987 WP_001128225.1 D-cysteine desulfhydrase -
  JKN65_RS11535 (JKN65_11460) tcyL 2257824..2258492 (+) 669 WP_001158226.1 cystine ABC transporter permease -
  JKN65_RS11540 (JKN65_11465) tcyN 2258489..2259241 (+) 753 WP_001273005.1 L-cystine ABC transporter ATP-binding protein TcyN -
  JKN65_RS11545 (JKN65_11470) sdiA 2259471..2260193 (+) 723 WP_001154288.1 transcriptional regulator SdiA -
  JKN65_RS11550 (JKN65_11475) yecF 2260261..2260485 (-) 225 WP_000106478.1 DUF2594 family protein YecF -
  JKN65_RS11555 (JKN65_11480) yecU 2260472..2260648 (-) 177 WP_001302050.1 protein YecU -
  JKN65_RS27775 - 2260686..2260802 (-) 117 WP_001302039.1 hypothetical protein -
  JKN65_RS11560 (JKN65_11485) letA 2260944..2261600 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JKN65_RS11565 (JKN65_11490) uvrC 2261597..2263429 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  JKN65_RS11570 (JKN65_11495) pgsA 2263486..2264034 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JKN65_RS11590 (JKN65_11515) - 2265026..2265307 (+) 282 WP_001303543.1 hypothetical protein -
  JKN65_RS11595 (JKN65_11520) - 2265328..2265522 (+) 195 WP_115801851.1 hypothetical protein -
  JKN65_RS11600 (JKN65_11525) - 2265464..2266600 (+) 1137 WP_032161583.1 IS30-like element IS30 family transposase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=500878 JKN65_RS11560 WP_000611328.1 2260944..2261600(+) (letA) [Escherichia coli O157:H7 strain Vac_07.1]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=500878 JKN65_RS11560 WP_000611328.1 2260944..2261600(+) (letA) [Escherichia coli O157:H7 strain Vac_07.1]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTAAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CATTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACGAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482