Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LacC0470_RS10495 Genome accession   NZ_CP064303
Coordinates   2210253..2210846 (+) Length   197 a.a.
NCBI ID   WP_025013653.1    Uniprot ID   -
Organism   Lacticaseibacillus casei strain MGB0470     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2205253..2215846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LacC0470_RS10480 (LacC0470_10480) gyrA 2206626..2209250 (+) 2625 WP_039639773.1 DNA gyrase subunit A -
  LacC0470_RS10485 (LacC0470_10485) - 2209422..2209800 (+) 379 Protein_2075 single-stranded DNA-binding protein -
  LacC0470_RS10490 (LacC0470_10490) rpsF 2209927..2210223 (+) 297 WP_010490297.1 30S ribosomal protein S6 -
  LacC0470_RS10495 (LacC0470_10495) ssb 2210253..2210846 (+) 594 WP_025013653.1 single-stranded DNA-binding protein Machinery gene
  LacC0470_RS10500 (LacC0470_10500) rpsR 2210936..2211172 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  LacC0470_RS10505 (LacC0470_10505) - 2211252..2211758 (-) 507 WP_025013654.1 type 1 glutamine amidotransferase domain-containing protein -
  LacC0470_RS10510 (LacC0470_10510) - 2212116..2213593 (+) 1478 Protein_2080 cytochrome ubiquinol oxidase subunit I -
  LacC0470_RS10515 (LacC0470_10515) cydB 2213586..2214605 (+) 1020 WP_039639770.1 cytochrome d ubiquinol oxidase subunit II -
  LacC0470_RS10520 (LacC0470_10520) - 2214748..2214942 (+) 195 WP_010490250.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21120.84 Da        Isoelectric Point: 4.9056

>NTDB_id=500602 LacC0470_RS10495 WP_025013653.1 2210253..2210846(+) (ssb) [Lacticaseibacillus casei strain MGB0470]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGIEGHIQTR
SYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQQPQNPPSFGSQSAPNNAPSSNPG
QNPAAGQSQGNNGNTANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=500602 LacC0470_RS10495 WP_025013653.1 2210253..2210846(+) (ssb) [Lacticaseibacillus casei strain MGB0470]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGCGGTACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGTGAACGGGAAACCGACTTTATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCAAACTTCACCAAGAAAGGCTCACTGGTCGGGATTGAAGGACACATTCAGACGCGT
TCTTACGATAATGCGCAAGGGCAGAAAGTCTATGTGACCGAAGTCGTCGTTGAGAACTTTGCATTGCTGGAATCACGGGC
AACGACACAACAACGGCCGTCCGAACCTGCGAATCCCGCTGGCCAAGGCAACCAGAATTATGGCGGTGGGCAGCAGTTTG
GTAATAACCAGCAGCCGCAAAACCCACCTAGCTTTGGTTCCCAAAGCGCCCCGAACAATGCACCATCATCGAATCCGGGC
CAAAACCCGGCAGCAGGTCAAAGCCAAGGCAACAATGGCAATACTGCTAATCCCGATCCTTTTGCCAATAATGGTAAACC
GATCGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.406

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.492