Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LacP0245_RS10165 Genome accession   NZ_CP064299
Coordinates   2110801..2111397 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei subsp. tolerans strain MGB0245     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2105801..2116397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LacP0245_RS10145 (LacP0245_10145) gyrA 2106302..2108923 (+) 2622 WP_194959058.1 DNA gyrase subunit A -
  LacP0245_RS10150 (LacP0245_10150) deoC 2109028..2109732 (-) 705 WP_016380932.1 deoxyribose-phosphate aldolase -
  LacP0245_RS10155 (LacP0245_10155) ssb 2109915..2110346 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  LacP0245_RS10160 (LacP0245_10160) rpsF 2110474..2110770 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  LacP0245_RS10165 (LacP0245_10165) ssb 2110801..2111397 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  LacP0245_RS10170 (LacP0245_10170) rpsR 2111484..2111720 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  LacP0245_RS10175 (LacP0245_10175) - 2112162..2113640 (+) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  LacP0245_RS10180 (LacP0245_10180) cydB 2113633..2114652 (+) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  LacP0245_RS10185 (LacP0245_10185) - 2114679..2114873 (+) 195 WP_003568474.1 hypothetical protein -
  LacP0245_RS10190 (LacP0245_10190) - 2114946..2115539 (-) 594 WP_003572821.1 TMEM175 family protein -
  LacP0245_RS10195 (LacP0245_10195) - 2115936..2116331 (-) 396 WP_003659007.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=500575 LacP0245_RS10165 WP_003568462.1 2110801..2111397(+) (ssb) [Lacticaseibacillus paracasei subsp. tolerans strain MGB0245]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=500575 LacP0245_RS10165 WP_003568462.1 2110801..2111397(+) (ssb) [Lacticaseibacillus paracasei subsp. tolerans strain MGB0245]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485