Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IQ680_RS13660 Genome accession   NZ_CP064266
Coordinates   2658081..2659907 (+) Length   608 a.a.
NCBI ID   WP_243521128.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2653081..2664907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS13640 - 2653200..2653871 (-) 672 WP_098337444.1 TerC family protein -
  IQ680_RS13645 mecA 2654390..2655067 (+) 678 WP_098337443.1 adaptor protein MecA Regulator
  IQ680_RS13650 cls 2655152..2656696 (+) 1545 WP_243521126.1 cardiolipin synthase -
  IQ680_RS13655 - 2656791..2658032 (+) 1242 WP_243521127.1 competence protein CoiA -
  IQ680_RS13660 pepF 2658081..2659907 (+) 1827 WP_243521128.1 oligoendopeptidase F Regulator
  IQ680_RS13665 - 2660358..2661251 (-) 894 WP_243521129.1 ClpXP adapter SpxH family protein -
  IQ680_RS13670 - 2661251..2661649 (-) 399 WP_243521130.1 globin -
  IQ680_RS13675 - 2661823..2662401 (-) 579 WP_243521131.1 CYTH domain-containing protein -
  IQ680_RS13680 - 2662546..2662917 (+) 372 WP_243521132.1 hypothetical protein -
  IQ680_RS13685 - 2662948..2663586 (+) 639 WP_016113795.1 GTP pyrophosphokinase family protein -
  IQ680_RS13690 - 2663605..2664402 (+) 798 WP_098337434.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70340.90 Da        Isoelectric Point: 4.7878

>NTDB_id=500418 IQ680_RS13660 WP_243521128.1 2658081..2659907(+) (pepF) [Bacillus pseudomycoides strain N451-2]
MSEQTKAKTLPERSEIEEINKWRLEDIFQTDEEWEKEFQAVKELLPRLAEFKGKLGDSADSLLEALQYEDEVSMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQASSGMAYIVPEILTIPEEKLQSFLQENKELSIYEHALEEITRQRPHVLSEA
EEALLAEAAEVMSASSNTFGMLNNADLKFPSIKDENGEEVEVTHGRYIQFLESDDRRVRHDAFHAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPETVYDQLVETVNANLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDILLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEAILNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDKEIGIEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEGK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=500418 IQ680_RS13660 WP_243521128.1 2658081..2659907(+) (pepF) [Bacillus pseudomycoides strain N451-2]
ATGTCTGAACAAACAAAAGCAAAAACATTACCAGAACGTAGTGAGATTGAAGAAATAAATAAATGGCGCTTGGAAGATAT
TTTCCAAACGGATGAAGAATGGGAAAAAGAATTTCAAGCAGTGAAAGAGTTATTACCGAGGTTAGCTGAATTTAAAGGGA
AACTTGGTGATTCAGCTGATTCATTATTAGAAGCTTTACAATATGAAGATGAAGTCTCAATGAGATTAGGAAAATTATAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAATTCTGTTTATCAAGCGTTAAATGATCGAGCAACAAACTTATA
TTCACAAGCATCTAGCGGCATGGCATATATCGTTCCTGAAATTTTAACAATCCCAGAAGAGAAGTTGCAATCTTTCTTAC
AAGAAAATAAAGAATTAAGCATATATGAACATGCGTTAGAAGAAATTACACGTCAGCGTCCGCATGTACTATCAGAAGCT
GAAGAAGCACTACTAGCTGAAGCGGCTGAAGTGATGAGTGCATCAAGTAATACATTTGGTATGCTGAATAATGCGGACTT
AAAATTCCCATCGATTAAAGATGAGAATGGGGAAGAAGTAGAAGTCACACATGGCCGTTATATTCAATTTTTAGAAAGCG
ATGATCGCCGTGTTCGTCATGATGCATTCCATGCGGTTTATGAAACATATGGAAAATATAAAAATACATTTGCGAGCACA
CTTAGTGGTGCAGTGAAACGTAATAATTTCAACGCTCGCGTTCGTAAATATGATTCTGCACGTCAAGCTGCGTTAAGTAA
TAATAACATTCCTGAGACAGTATATGATCAACTTGTTGAGACAGTAAATGCTAACTTACATTTATTGCACCGTTACATTG
ACATTCGTAAGCGTGCATTAGGACTTGATGAACTGCATATGTACGACCTATATACACCGCTTGTACCAGAAGTCAAAATG
AATGTAAAATATGAAGAAGCACAAGACATTCTACTTAAATCATTAAACGTTCTTGGCGATGAATATGTTGAAATTTTGAA
AGAAGCATATGAAAACCGCTGGGTAGATGTATATGAAAATAAAGGGAAACGAAGCGGGGCTTATTCATCTGGTGCATATG
GGACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAACAATTTATTTACACTGGCACATGAGTTTGGTCATTCT
GTACATAGCTACTATACAAGAAAAACACAACCACATGTATACGGTGACTATTCAATCTTCGTTGCAGAAGTTGCATCAAC
TTGTAACGAAGCAATTTTAAATGATTATTTATTAAAAACGACAGAAGACAAGAAAGAGCGTTTATATTTATTAAATCATT
ATTTAGAAGGATTCCGCGGGACTGTATTCCGTCAAACGATGTTTGCTGAATTTGAACATATCATTCATAAAAAAGTACAA
GAAGGGCATGCTGTTACGCCAGATATGTTAACTGAAATCTACTATGATTTAAATAAAAAATACTTTGGTGATGCTTTAGT
CATCGATAAAGAAATTGGTATAGAGTGGTCTCGTATTCCGCACTTCTATTACAACTATTATGTATATCAATATGCAACAG
GGTTTAGTGCGGCAACAGCTTTATCAAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAGCGTTATATTAACGAATTC
TTAAAAGCAGGAAGCTCTGATTATCCAATTGAAGTGCTGAAAAAAGCAGGTGTAGATATGGCATCTCCAGAGCCTGTTAA
AGAAGCGCTACAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCGCTATTATTTGAAGGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

97.862

0.488