Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KMZ31_RS13130 Genome accession   NZ_CP076117
Coordinates   2693111..2694883 (-) Length   590 a.a.
NCBI ID   WP_032873770.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain CQN-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2688111..2699883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ31_RS13110 (KMZ31_12995) sdhA 2688323..2690083 (-) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -
  KMZ31_RS13115 (KMZ31_13000) sdhC 2690117..2690725 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  KMZ31_RS13120 (KMZ31_13005) - 2691022..2691468 (+) 447 WP_007612940.1 YslB family protein -
  KMZ31_RS13125 (KMZ31_13010) - 2691515..2692744 (-) 1230 WP_032873773.1 aspartate kinase -
  KMZ31_RS13130 (KMZ31_13015) uvrC 2693111..2694883 (-) 1773 WP_032873770.1 excinuclease ABC subunit UvrC Machinery gene
  KMZ31_RS13135 (KMZ31_13020) trxA 2695025..2695339 (-) 315 WP_003152560.1 thioredoxin -
  KMZ31_RS13140 (KMZ31_13025) - 2695493..2696983 (-) 1491 WP_032873767.1 alpha-N-arabinofuranosidase -
  KMZ31_RS13145 (KMZ31_13030) - 2697196..2698173 (-) 978 WP_032873765.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  KMZ31_RS13150 (KMZ31_13035) - 2698205..2698978 (-) 774 WP_032873763.1 electron transfer flavoprotein subunit beta/FixA family protein -
  KMZ31_RS13155 (KMZ31_13040) - 2698992..2699771 (-) 780 WP_032873761.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68341.32 Da        Isoelectric Point: 9.7120

>NTDB_id=500405 KMZ31_RS13130 WP_032873770.1 2693111..2694883(-) (uvrC) [Bacillus amyloliquefaciens strain CQN-2]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELKAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMISEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=500405 KMZ31_RS13130 WP_032873770.1 2693111..2694883(-) (uvrC) [Bacillus amyloliquefaciens strain CQN-2]
ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGGTCTTATTTCACCGGTTCTCATGACGCAAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTGATTGTCACTCGGAATGTCAAAAAAGACAAAGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTC
TATTATCATCTCGGACAATGCCTCGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTGTTGAAGACAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTCAAAGCGAAAATGGCAGAGGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAAAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTCATTCGCCAAGG
AAAACTGATCGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGACGAAGAGTTTCTGACCTTCATCGGCCAGT
TCTATTCCAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCAGCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
TCTGCGGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGAAGCGCTGA
ATATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCGGATGATTACGGTTC
AATGAGGGAAGTCGTCAGAAGAAGGTACACGAGGGTGCTCCGCGAAAACCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGATTGGCG
AAAGATGATAAACACCGAACATCCAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTTTTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGTATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGAGGAAAAAGCG
TCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCGGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrB/uvrC motif (UVR)

(198-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.864

99.661

0.597
  uvrC Streptococcus pneumoniae R6

59.524

99.661

0.593
  uvrC Streptococcus pneumoniae D39

59.524

99.661

0.593