Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | IQ680_RS08160 | Genome accession | NZ_CP064266 |
| Coordinates | 1546466..1548901 (+) | Length | 811 a.a. |
| NCBI ID | WP_243525425.1 | Uniprot ID | - |
| Organism | Bacillus pseudomycoides strain N451-2 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1541466..1553901
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQ680_RS08145 | ctsR | 1544216..1544677 (+) | 462 | WP_243525422.1 | transcriptional regulator CtsR | - |
| IQ680_RS08150 | - | 1544826..1545374 (+) | 549 | WP_243525423.1 | UvrB/UvrC motif-containing protein | - |
| IQ680_RS08155 | - | 1545379..1546443 (+) | 1065 | WP_243525424.1 | protein arginine kinase | - |
| IQ680_RS08160 | clpC | 1546466..1548901 (+) | 2436 | WP_243525425.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| IQ680_RS08165 | radA | 1548997..1550373 (+) | 1377 | WP_243525426.1 | DNA repair protein RadA | Machinery gene |
| IQ680_RS08170 | disA | 1550377..1551450 (+) | 1074 | WP_000392160.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| IQ680_RS08175 | - | 1551611..1552729 (+) | 1119 | WP_243525427.1 | PIN/TRAM domain-containing protein | - |
| IQ680_RS08180 | ispD | 1552746..1553429 (+) | 684 | WP_243525428.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90598.56 Da Isoelectric Point: 6.4861
>NTDB_id=500404 IQ680_RS08160 WP_243525425.1 1546466..1548901(+) (clpC) [Bacillus pseudomycoides strain N451-2]
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEMSQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEATSGHQGGASANAN
TPTLDSLARDLTVVAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDASVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETNKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDEGRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELELTSKAIESIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVVFDAEGE
SFVIRSAEKVK
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEMSQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEATSGHQGGASANAN
TPTLDSLARDLTVVAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDASVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETNKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDEGRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELELTSKAIESIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVVFDAEGE
SFVIRSAEKVK
Nucleotide
Download Length: 2436 bp
>NTDB_id=500404 IQ680_RS08160 WP_243525425.1 1546466..1548901(+) (clpC) [Bacillus pseudomycoides strain N451-2]
ATGATGTTTGGAAGATTTACAGAACGAGCACAGAAAGTATTAGCTTTATCTCAAGAAGAGGCAATTCGCATTGGGCATAA
TAATATTGGGACAGAACATATTTTACTTGGGCTTGTGCGCGAAGGTGAAGGAATTGCAGCTAAAGCATTGATTGCTCTTG
GATTAAGCCCAGAGAAGGTACAGAAAGAGGTAGAGGCATTAATTGGTCGTGGAACAGAGATGTCTCAAACCGTTCATTAT
ACACCACGTGCAAAAAAAGTAATCGAATTATCTATGGATGAAGCACGTAAACTTGGTCATTCTTATGTTGGAACGGAACA
CATTTTACTAGGTTTGATTCGTGAAGGTGAAGGTGTTGCAGCGCGTGTTTTAAATAACTTAGGTGTAAGTTTAAATAAAG
CAAGACAACAAGTATTGCAGCTTCTTGGAAGTAATGAAGCTACATCTGGTCATCAAGGTGGTGCATCAGCAAATGCAAAT
ACACCAACACTGGATAGTTTAGCAAGAGATTTGACAGTTGTTGCACGTGAAGGACGCTTAGATCCTGTTATTGGACGTAG
TAAAGAGATTCAACGTGTTATTGAAGTATTGAGCCGTAGAACAAAGAATAACCCAGTATTAATTGGAGAACCTGGGGTAG
GTAAAACAGCAATTGCTGAGGGCTTAGCACAGCAAATTGTAAATAATGAAGTTCCAGAAACATTACGCGATAAGCGTGTT
ATGACGTTAGATATGGGCACTGTGGTTGCTGGTACGAAGTATCGTGGTGAATTTGAAGATCGCTTAAAGAAAGTGATGGA
TGAAATTCGACAAGCGGGTAATATTATCTTGTTTATCGATGAACTTCATACATTAATTGGTGCAGGTGGTGCAGAAGGTG
CAATTGACGCATCTAACATTTTAAAACCATCATTAGCACGTGGTGAATTGCAATGTATTGGAGCAACAACATTAGATGAG
TATCGTAAATACATTGAAAAAGATGCAGCATTAGAAAGACGCTTCCAACCAATTCACGTTGACGAACCGAGCTTAGAAGA
ATCGATTCAAATTTTAAAAGGACTACGTGACCGTTATGAAGCACATCACCGTGTTTCTATTACAGATGATGCAATTGATG
CATCTGTAAAACTTTCGGATCGTTATATTACAGATCGCTTCTTACCTGATAAAGCAATTGACTTAATTGATGAAGCCGCT
TCAAAAGTGCGCTTACGTTCTTATACAACACCACCAAATTTAAAAGAGCTTGAAGTGAAGCTTGAAGAAATTAGAAAAGA
AAAGGATGCAGCCGTACAGAGCCAAGAGTTTGAAAAGGCAGCTTCTTTACGTGATATGGAACAACGTTTACGTGAAAAGT
TAGAAGATACAAAACGTCAGTGGAAAGAGCAGCAAGGAAAAGAAAACTCTGAAGTGACAGTAGAGGACATTGCAAATGTT
GTTTCTACGTGGACGCGTATTCCGGTTTCTAAACTGGCACAAACAGAAACAAATAAATTATTGAATCTAGAATCTATTTT
ACATGACCGTGTAATTGGCCAAGATGAAGCTGTTGTTGCTGTAGCGAAAGCAGTACGCCGTGCACGAGCAGGTTTAAAGG
ATCCAAAACGTCCAATTGGTTCATTTATTTTCTTAGGACCGACTGGTGTAGGTAAAACGGAATTAGCAAGAGCATTGGCA
GAATCTATGTTCGGTGATGAGGATGCAATGATTCGTATTGATATGTCTGAGTATATGGAAAAACATTCTACTTCTCGTTT
AGTGGGATCCCCTCCAGGATATGTTGGATATGAAGAAGGAGGTCAATTGACTGAAAAGGTTCGCCGTAAACCATATTCTG
TTGTTTTATTAGATGAAGTAGAGAAGGCTCATCCAGATGTATTTAACATTTTGTTACAAGTGCTAGAAGATGGACGCTTA
ACAGACTCTAAAGGACGTACAGTTGATTTCCGTAATACGATTGTAATTATGACATCTAACGTTGGTGCGGAAGCATTAAA
ACGTAATAAACACCTTGGTTTTAACGTACAGGATGAGGGCCGTGATTATTCAGATATGAAGGGTAAAGTAATGGATGAAT
TGAAAAAAGCATTTCGTCCAGAATTTTTAAACCGTATTGATGAAATCATTGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAGATCGTAACGCTTATGGTTAATCAACTAGTGAATCGATTAAAAGAACAAGAGATTGAACTAGAGTTAACAAGCAA
AGCAATTGAATCAATTGCTGATAAAGGCTTTGATCGTGAATATGGTGCTCGTCCTCTCCGCAGAGCAATCCAAAAACATG
TGGAAGATCGATTATCAGAAGAGCTTCTAAAAGGAGCGATTGAAAAAGGACAAAAAGTTGTCTTTGATGCTGAAGGAGAA
TCATTTGTCATTCGTAGTGCAGAAAAGGTAAAATAA
ATGATGTTTGGAAGATTTACAGAACGAGCACAGAAAGTATTAGCTTTATCTCAAGAAGAGGCAATTCGCATTGGGCATAA
TAATATTGGGACAGAACATATTTTACTTGGGCTTGTGCGCGAAGGTGAAGGAATTGCAGCTAAAGCATTGATTGCTCTTG
GATTAAGCCCAGAGAAGGTACAGAAAGAGGTAGAGGCATTAATTGGTCGTGGAACAGAGATGTCTCAAACCGTTCATTAT
ACACCACGTGCAAAAAAAGTAATCGAATTATCTATGGATGAAGCACGTAAACTTGGTCATTCTTATGTTGGAACGGAACA
CATTTTACTAGGTTTGATTCGTGAAGGTGAAGGTGTTGCAGCGCGTGTTTTAAATAACTTAGGTGTAAGTTTAAATAAAG
CAAGACAACAAGTATTGCAGCTTCTTGGAAGTAATGAAGCTACATCTGGTCATCAAGGTGGTGCATCAGCAAATGCAAAT
ACACCAACACTGGATAGTTTAGCAAGAGATTTGACAGTTGTTGCACGTGAAGGACGCTTAGATCCTGTTATTGGACGTAG
TAAAGAGATTCAACGTGTTATTGAAGTATTGAGCCGTAGAACAAAGAATAACCCAGTATTAATTGGAGAACCTGGGGTAG
GTAAAACAGCAATTGCTGAGGGCTTAGCACAGCAAATTGTAAATAATGAAGTTCCAGAAACATTACGCGATAAGCGTGTT
ATGACGTTAGATATGGGCACTGTGGTTGCTGGTACGAAGTATCGTGGTGAATTTGAAGATCGCTTAAAGAAAGTGATGGA
TGAAATTCGACAAGCGGGTAATATTATCTTGTTTATCGATGAACTTCATACATTAATTGGTGCAGGTGGTGCAGAAGGTG
CAATTGACGCATCTAACATTTTAAAACCATCATTAGCACGTGGTGAATTGCAATGTATTGGAGCAACAACATTAGATGAG
TATCGTAAATACATTGAAAAAGATGCAGCATTAGAAAGACGCTTCCAACCAATTCACGTTGACGAACCGAGCTTAGAAGA
ATCGATTCAAATTTTAAAAGGACTACGTGACCGTTATGAAGCACATCACCGTGTTTCTATTACAGATGATGCAATTGATG
CATCTGTAAAACTTTCGGATCGTTATATTACAGATCGCTTCTTACCTGATAAAGCAATTGACTTAATTGATGAAGCCGCT
TCAAAAGTGCGCTTACGTTCTTATACAACACCACCAAATTTAAAAGAGCTTGAAGTGAAGCTTGAAGAAATTAGAAAAGA
AAAGGATGCAGCCGTACAGAGCCAAGAGTTTGAAAAGGCAGCTTCTTTACGTGATATGGAACAACGTTTACGTGAAAAGT
TAGAAGATACAAAACGTCAGTGGAAAGAGCAGCAAGGAAAAGAAAACTCTGAAGTGACAGTAGAGGACATTGCAAATGTT
GTTTCTACGTGGACGCGTATTCCGGTTTCTAAACTGGCACAAACAGAAACAAATAAATTATTGAATCTAGAATCTATTTT
ACATGACCGTGTAATTGGCCAAGATGAAGCTGTTGTTGCTGTAGCGAAAGCAGTACGCCGTGCACGAGCAGGTTTAAAGG
ATCCAAAACGTCCAATTGGTTCATTTATTTTCTTAGGACCGACTGGTGTAGGTAAAACGGAATTAGCAAGAGCATTGGCA
GAATCTATGTTCGGTGATGAGGATGCAATGATTCGTATTGATATGTCTGAGTATATGGAAAAACATTCTACTTCTCGTTT
AGTGGGATCCCCTCCAGGATATGTTGGATATGAAGAAGGAGGTCAATTGACTGAAAAGGTTCGCCGTAAACCATATTCTG
TTGTTTTATTAGATGAAGTAGAGAAGGCTCATCCAGATGTATTTAACATTTTGTTACAAGTGCTAGAAGATGGACGCTTA
ACAGACTCTAAAGGACGTACAGTTGATTTCCGTAATACGATTGTAATTATGACATCTAACGTTGGTGCGGAAGCATTAAA
ACGTAATAAACACCTTGGTTTTAACGTACAGGATGAGGGCCGTGATTATTCAGATATGAAGGGTAAAGTAATGGATGAAT
TGAAAAAAGCATTTCGTCCAGAATTTTTAAACCGTATTGATGAAATCATTGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAGATCGTAACGCTTATGGTTAATCAACTAGTGAATCGATTAAAAGAACAAGAGATTGAACTAGAGTTAACAAGCAA
AGCAATTGAATCAATTGCTGATAAAGGCTTTGATCGTGAATATGGTGCTCGTCCTCTCCGCAGAGCAATCCAAAAACATG
TGGAAGATCGATTATCAGAAGAGCTTCTAAAAGGAGCGATTGAAAAAGGACAAAAAGTTGTCTTTGATGCTGAAGGAGAA
TCATTTGTCATTCGTAGTGCAGAAAAGGTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
86.049 |
99.877 |
0.859 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.938 |
100 |
0.499 |
| clpC | Streptococcus thermophilus LMD-9 |
46.209 |
100 |
0.473 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.718 |
100 |
0.467 |
| clpC | Streptococcus mutans UA159 |
45.018 |
100 |
0.462 |
| clpC | Streptococcus pneumoniae D39 |
46.801 |
98.274 |
0.46 |
| clpC | Streptococcus pneumoniae Rx1 |
46.801 |
98.274 |
0.46 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.5 |
98.644 |
0.459 |
| clpE | Streptococcus mutans UA159 |
54 |
80.148 |
0.433 |
| clpE | Streptococcus pneumoniae R6 |
53.323 |
79.778 |
0.425 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.323 |
79.778 |
0.425 |
| clpE | Streptococcus pneumoniae Rx1 |
53.323 |
79.778 |
0.425 |
| clpE | Streptococcus pneumoniae D39 |
53.323 |
79.778 |
0.425 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.208 |
78.175 |
0.408 |