NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	IS507_RS01260	Genome accession	NZ_CP064194
Coordinates	246788..248275 (-)	Length	495 a.a.
NCBI ID	WP_279446775.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain X4-65
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 241788..253275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IS507_RS01235	-	242476..242646 (+)	171	WP_000492275.1	hypothetical protein	-
IS507_RS01240	-	242703..243515 (+)	813	WP_000975212.1	TorF family putative porin	-
IS507_RS01245	-	243558..244436 (-)	879	WP_279446777.1	dihydrodipicolinate synthase family protein	-
IS507_RS01250	-	244452..245228 (-)	777	WP_259603733.1	aldolase	-
IS507_RS01255	-	245340..246791 (+)	1452	WP_279446776.1	PLP-dependent aminotransferase family protein	-
IS507_RS01260	comM	246788..248275 (-)	1488	WP_279446775.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
IS507_RS01265	-	248341..248568 (-)	228	WP_259603732.1	accessory factor UbiK family protein	-
IS507_RS01270	glnK	248848..249186 (+)	339	WP_000780326.1	P-II family nitrogen regulator	-
IS507_RS01275	-	249244..250641 (+)	1398	WP_279446774.1	ammonium transporter	-
IS507_RS01280	nrdR	250799..251257 (+)	459	WP_000543541.1	transcriptional regulator NrdR	-
IS507_RS01285	ribD	251273..252358 (+)	1086	WP_001292519.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54494.47 Da Isoelectric Point: 7.5788

                                >NTDB_id=500030 IS507_RS01260 WP_279446775.1 246788..248275(-) (comM) [Acinetobacter baumannii strain X4-65]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL

KELCEHFLGTQKLAHAQPSAHANEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSTTVRQRVIYAYKQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=500030 IS507_RS01260 WP_279446775.1 246788..248275(-) (comM) [Acinetobacter baumannii strain X4-65]

ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA

AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA

TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG

CTAGATCTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT

TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC

ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA

AAAGAGTTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCGCAGCCAAGTGCCCATGCAAATGAAATGCCCTA

TAAATTTGACCTTGCAGATGTTAAAGGTCAGCTACGGCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC

TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT

CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC

CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG

GTGTTCTATTTTTAGATGAACTTCCCGAATTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA

ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG

TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGTATATCGGGAC

CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA

GATTCTACAACTGTACGACAACGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT

CTCACCCAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA

ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA

AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	50.806	100	0.509
comM	Glaesserella parasuis strain SC1401	50.1	100	0.505
comM	Legionella pneumophila strain ERS1305867	48.795	100	0.491
comM	Legionella pneumophila str. Paris	48.795	100	0.491
comM	Haemophilus influenzae Rd KW20	48.697	100	0.491
comM	Vibrio campbellii strain DS40M4	48.283	100	0.483
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.2	100	0.467

Detailed information NTG0500030