Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   IS507_RS00840 Genome accession   NZ_CP064194
Coordinates   168459..169613 (-) Length   384 a.a.
NCBI ID   WP_005129904.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain X4-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163459..174613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS507_RS00820 - 164620..165270 (+) 651 WP_086227614.1 TetR/AcrR family transcriptional regulator -
  IS507_RS00825 - 165376..166296 (+) 921 WP_001994180.1 DMT family transporter -
  IS507_RS00830 - 166688..167257 (-) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  IS507_RS00835 dprA 167308..168438 (-) 1131 WP_259603722.1 DNA-processing protein DprA Machinery gene
  IS507_RS00840 tsaP 168459..169613 (-) 1155 WP_005129904.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IS507_RS00845 def 169736..170266 (+) 531 WP_001196539.1 peptide deformylase -
  IS507_RS00850 - 170303..170731 (+) 429 WP_259603723.1 DUF2946 family protein -
  IS507_RS00855 - 170803..172917 (+) 2115 WP_032043964.1 TonB-dependent copper receptor -
  IS507_RS00860 - 172971..173177 (+) 207 WP_000182542.1 hypothetical protein -
  IS507_RS00865 - 173247..174461 (-) 1215 WP_001177956.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42373.31 Da        Isoelectric Point: 8.5841

>NTDB_id=500029 IS507_RS00840 WP_005129904.1 168459..169613(-) (tsaP) [Acinetobacter baumannii strain X4-65]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTHLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=500029 IS507_RS00840 WP_005129904.1 168459..169613(-) (tsaP) [Acinetobacter baumannii strain X4-65]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGGCAAACCACTCACT
TACAACCTCAAGTTCGCGTCGAAGCATTAAATAATAGTGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCATTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGTAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.74

100

0.997