Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IS519_RS15605 Genome accession   NZ_CP064170
Coordinates   3431788..3433176 (+) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio crassostreae strain ED395     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3426788..3438176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS15585 (IS519_15570) rsxB 3427219..3427812 (-) 594 WP_004734040.1 electron transport complex subunit RsxB -
  IS519_RS15590 (IS519_15575) rsxA 3427815..3428393 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  IS519_RS15600 (IS519_15585) uvrB 3429455..3431485 (+) 2031 WP_050652938.1 excinuclease ABC subunit UvrB -
  IS519_RS15605 (IS519_15590) luxO 3431788..3433176 (+) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  IS519_RS15610 (IS519_15595) luxU 3433201..3433545 (+) 345 WP_017066591.1 quorum-sensing phosphorelay protein LuxU -
  IS519_RS15615 (IS519_15600) - 3433621..3434508 (-) 888 WP_050652940.1 YvcK family protein -
  IS519_RS15620 (IS519_15605) moaA 3434844..3435833 (+) 990 WP_009848642.1 GTP 3',8-cyclase MoaA -
  IS519_RS15625 (IS519_15610) moaB 3435920..3436432 (+) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  IS519_RS15630 (IS519_15615) moaC 3436445..3436924 (+) 480 WP_050651566.1 cyclic pyranopterin monophosphate synthase MoaC -
  IS519_RS15635 (IS519_15620) moaD 3436921..3437166 (+) 246 WP_050651565.1 molybdopterin synthase sulfur carrier subunit -
  IS519_RS15640 (IS519_15625) moaE 3437168..3437623 (+) 456 WP_017062176.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=499958 IS519_RS15605 WP_004734031.1 3431788..3433176(+) (luxO) [Vibrio crassostreae strain ED395]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=499958 IS519_RS15605 WP_004734031.1 3431788..3433176(+) (luxO) [Vibrio crassostreae strain ED395]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCGGTAGCAGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTTGGCACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTGCCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCTGAAGTTCCAGTTATCTTTATGACGGCTCACGGCTCTATCGATACCGCCGTAGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAGCCGTGTGAAGCCGATCGACTTCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAGCTTAAAA
ACAGCTCGGAACACCCGGGAAACCAGAACTACCAAGGCTTTATCGGTAGCAGCCAAACCATGCAGCAGGTTTACCGAACG
ATCGATTCTGCAGCATCGAGTAAGGCGAGCATTTTCATTACTGGTGAAAGTGGTACCGGTAAAGAGGTATGTGCAGAAGC
CATTCATGCGGCGAGTAAGCGTGGCGATAAGCCGTTTATCGCGATTAACTGTGCCGCTATCCCTAAAGATCTGATTGAAA
GTGAGCTGTTTGGCCACGTTAAAGGTGCCTTTACCGGTGCTGCGACCGATCGCCAAGGTGCTGCTGAGCTTGCTGATGGC
GGAACACTGTTCCTTGATGAATTGTGTGAAATGGACTTAGAGCTGCAAACCAAGCTGCTTCGTTTTATCCAAACCGGTAC
TTTCCAAAAAGTCGGCTCTTCGAAGATGAAGAGTGTGGACGTTCGTTTTGTGTGCGCGACTAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCACTGCACTTGCCGCCATTGCGCGAG
CGTGGTGAAGATGTCATCGAGATTGCGTATTCTCTGCTAGGCTATATGTCGGTCGAGGAGGGGAAGGCGTTTGTACGTTT
TGCTCAGGAAGTACTTGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTGTTGCGGAACG
TGGTGGTTTTGAATAACGGCAAAGAGATTACTCTCAACATGCTTCCACCACCGTTGAACCAACCGATTGAAAACAGTCTG
CGATTGAAAGAGAAGCAGAATGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAAGCCATTAAAGCGTGTGATGGCAACATCCCCCGTGCGGCAGGTTTCTTAGATGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37