Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   IS519_RS13310 Genome accession   NZ_CP064170
Coordinates   2907233..2907838 (-) Length   201 a.a.
NCBI ID   WP_017079965.1    Uniprot ID   A0A1R3EZ21
Organism   Vibrio crassostreae strain ED395     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2902233..2912838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS13300 (IS519_13290) aceF 2903435..2905324 (+) 1890 WP_248639150.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  IS519_RS13305 (IS519_13295) lpdA 2905567..2906997 (+) 1431 WP_017059440.1 dihydrolipoyl dehydrogenase -
  IS519_RS13310 (IS519_13300) opaR 2907233..2907838 (-) 606 WP_017079965.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  IS519_RS13315 (IS519_13305) hpt 2908176..2908706 (+) 531 WP_017059438.1 hypoxanthine phosphoribosyltransferase -
  IS519_RS13320 (IS519_13310) can 2908781..2909449 (-) 669 WP_017059437.1 carbonate dehydratase -
  IS519_RS13325 (IS519_13315) - 2909736..2911367 (+) 1632 WP_248641330.1 SulP family inorganic anion transporter -
  IS519_RS13330 (IS519_13320) - 2911718..2912635 (+) 918 WP_248639153.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23217.47 Da        Isoelectric Point: 6.4040

>NTDB_id=499956 IS519_RS13310 WP_017079965.1 2907233..2907838(-) (opaR) [Vibrio crassostreae strain ED395]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAHDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=499956 IS519_RS13310 WP_017079965.1 2907233..2907838(-) (opaR) [Vibrio crassostreae strain ED395]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATCGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTCGCAACTGTAT
TTAATTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCACGA
TAGCCATTGGTTAAATGTGTGGTTCGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCGCTATTCGTAACAACGAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGTGGCGAAGTCTGTGACGATCACGACCCGAAA
CATCTAGCGAATCTATTCCACGGCATTTGCTACTCGCTATTCATCCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGCTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EZ21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82

99.502

0.816
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726