Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IRJ28_RS22085 Genome accession   NZ_CP064096
Coordinates   4209598..4210287 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain N1142-3at     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4204598..4215287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS22065 tagO 4205164..4206240 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  IRJ28_RS22070 tagV 4206313..4207488 (-) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  IRJ28_RS22075 yvyE 4207488..4208141 (-) 654 WP_003227979.1 YigZ family protein -
  IRJ28_RS22080 degS 4208358..4209515 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IRJ28_RS22085 degU 4209598..4210287 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IRJ28_RS22090 fakBA 4210385..4211230 (+) 846 WP_003244125.1 DegV family protein -
  IRJ28_RS22095 comFA 4211336..4212727 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  IRJ28_RS22100 comFB 4212787..4213083 (+) 297 WP_003227989.1 late competence protein ComFB -
  IRJ28_RS22105 comFC 4213047..4213769 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  IRJ28_RS22110 yvyF 4213843..4214262 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IRJ28_RS22115 flgM 4214343..4214609 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  IRJ28_RS22120 flgN 4214625..4215107 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=499520 IRJ28_RS22085 WP_003219701.1 4209598..4210287(+) (degU) [Bacillus subtilis strain N1142-3at]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=499520 IRJ28_RS22085 WP_003219701.1 4209598..4210287(+) (degU) [Bacillus subtilis strain N1142-3at]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1