Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IRJ28_RS19205 Genome accession   NZ_CP064096
Coordinates   3655463..3655981 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain N1142-3at     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3650463..3660981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS19185 yyzM 3651537..3651743 (+) 207 WP_003226838.1 DUF951 family protein -
  IRJ28_RS19190 yyaE 3651794..3653797 (+) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  IRJ28_RS19195 ychF 3653924..3655024 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  IRJ28_RS19200 rpsF 3655135..3655422 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  IRJ28_RS19205 ssbA 3655463..3655981 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  IRJ28_RS19210 rpsR 3656025..3656264 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  IRJ28_RS19215 xth 3656329..3657087 (+) 759 WP_003243194.1 exodeoxyribonuclease III -
  IRJ28_RS19220 ccpB 3657146..3658081 (+) 936 WP_003243573.1 transcriptional regulator CcpB -
  IRJ28_RS19225 yyaH 3658137..3658517 (+) 381 WP_003244460.1 VOC family protein -
  IRJ28_RS19230 maa 3658535..3659089 (+) 555 WP_003242928.1 sugar O-acetyltransferase -
  IRJ28_RS19235 yyaJ 3659123..3660478 (-) 1356 WP_003243011.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=499511 IRJ28_RS19205 WP_003219228.1 3655463..3655981(+) (ssbA) [Bacillus subtilis strain N1142-3at]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=499511 IRJ28_RS19205 WP_003219228.1 3655463..3655981(+) (ssbA) [Bacillus subtilis strain N1142-3at]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378