Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IRJ28_RS16930 Genome accession   NZ_CP064096
Coordinates   3206003..3206953 (-) Length   316 a.a.
NCBI ID   WP_003234491.1    Uniprot ID   A0AAE2SHG3
Organism   Bacillus subtilis strain N1142-3at     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3201003..3211953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS16910 ycnB 3201871..3203289 (+) 1419 WP_003246604.1 MDR family MFS transporter -
  IRJ28_RS16915 yclQ 3203336..3204289 (-) 954 WP_003246619.1 petrobactin ABC transporter substrate-binding protein YclQ -
  IRJ28_RS16920 yclP 3204311..3205069 (-) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  IRJ28_RS16925 yclO 3205063..3206010 (-) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  IRJ28_RS16930 ceuB 3206003..3206953 (-) 951 WP_003234491.1 petrobactin ABC transporter permease YclN Machinery gene
  IRJ28_RS16935 thrD 3207338..3208702 (+) 1365 WP_003234493.1 aspartate kinase -
  IRJ28_RS16940 yczN 3208856..3208969 (+) 114 WP_003234495.1 YjcZ family sporulation protein -
  IRJ28_RS16945 yczM 3209051..3209140 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  IRJ28_RS16950 phrC 3209240..3209362 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  IRJ28_RS16955 rapC 3209346..3210494 (-) 1149 WP_003246686.1 response regulator aspartate phosphatase RapC Regulator

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34899.33 Da        Isoelectric Point: 9.9364

>NTDB_id=499499 IRJ28_RS16930 WP_003234491.1 3206003..3206953(-) (ceuB) [Bacillus subtilis strain N1142-3at]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTVLLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=499499 IRJ28_RS16930 WP_003234491.1 3206003..3206953(-) (ceuB) [Bacillus subtilis strain N1142-3at]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TTGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGTGCTGTTGGGAGCGGTTTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522