Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   IRJ28_RS12875 Genome accession   NZ_CP064096
Coordinates   2431755..2432708 (-) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain N1142-3at     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2426755..2437708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS12845 appD 2426874..2427860 (-) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -
  IRJ28_RS12850 yjaZ 2428052..2428837 (-) 786 WP_003232967.1 DUF2268 domain-containing protein -
  IRJ28_RS12855 fabF 2428913..2430154 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  IRJ28_RS12860 fabH 2430177..2431115 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  IRJ28_RS12865 yjzB 2431280..2431519 (+) 240 WP_003232972.1 spore coat protein YjzB -
  IRJ28_RS12870 comZ 2431549..2431740 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  IRJ28_RS12875 med 2431755..2432708 (-) 954 WP_003245494.1 transcriptional regulator Med Regulator
  IRJ28_RS12880 - 2432799..2433356 (-) 558 WP_003232974.1 hypothetical protein -
  IRJ28_RS12885 - 2433438..2434172 (-) 735 WP_003245223.1 hypothetical protein -
  IRJ28_RS12890 yjzD 2434421..2434606 (+) 186 WP_003245236.1 DUF2929 domain-containing protein -
  IRJ28_RS12895 yjzC 2434652..2434831 (-) 180 WP_003245356.1 YjzC family protein -
  IRJ28_RS12900 argF 2434917..2435876 (-) 960 WP_003232980.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=499484 IRJ28_RS12875 WP_003245494.1 2431755..2432708(-) (med) [Bacillus subtilis strain N1142-3at]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=499484 IRJ28_RS12875 WP_003245494.1 2431755..2432708(-) (med) [Bacillus subtilis strain N1142-3at]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1