Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IRJ28_RS10315 Genome accession   NZ_CP064096
Coordinates   1955860..1956753 (-) Length   297 a.a.
NCBI ID   WP_003245871.1    Uniprot ID   A0AAE2SJU2
Organism   Bacillus subtilis strain N1142-3at     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1950860..1961753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS10300 xerC 1951232..1952146 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  IRJ28_RS10305 trmFO 1952214..1953521 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IRJ28_RS10310 topA 1953597..1955672 (-) 2076 WP_003245599.1 type I DNA topoisomerase -
  IRJ28_RS10315 dprA 1955860..1956753 (-) 894 WP_003245871.1 DNA-processing protein DprA Machinery gene
  IRJ28_RS10320 sucD 1956814..1957716 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  IRJ28_RS10325 sucC 1957745..1958902 (-) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  IRJ28_RS10330 ylqH 1959075..1959356 (-) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  IRJ28_RS10335 - 1959353..1961083 (-) 1731 WP_003245096.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32935.26 Da        Isoelectric Point: 9.9142

>NTDB_id=499472 IRJ28_RS10315 WP_003245871.1 1955860..1956753(-) (dprA) [Bacillus subtilis strain N1142-3at]
MDQAAVCLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=499472 IRJ28_RS10315 WP_003245871.1 1955860..1956753(-) (dprA) [Bacillus subtilis strain N1142-3at]
TTGGATCAGGCCGCTGTCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGCACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  dprA Legionella pneumophila strain ERS1305867

38.462

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377