Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IRJ28_RS05775 Genome accession   NZ_CP064096
Coordinates   1086349..1086684 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain N1142-3at     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081349..1091684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS05725 comGC 1081368..1081664 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  IRJ28_RS05730 comGD 1081654..1082085 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  IRJ28_RS05735 comGE 1082069..1082416 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  IRJ28_RS05740 comGF 1082442..1082825 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  IRJ28_RS05745 comGG 1082826..1083200 (+) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  IRJ28_RS05750 spoIIT 1083271..1083450 (+) 180 WP_003230176.1 YqzE family protein -
  IRJ28_RS05755 yqzG 1083492..1083818 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  IRJ28_RS05760 tapA 1084090..1084851 (+) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  IRJ28_RS05765 sipW 1084835..1085407 (+) 573 WP_003246088.1 signal peptidase I -
  IRJ28_RS05770 tasA 1085471..1086256 (+) 786 WP_004398632.1 biofilm matrix protein TasA -
  IRJ28_RS05775 sinR 1086349..1086684 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  IRJ28_RS05780 sinI 1086718..1086891 (-) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  IRJ28_RS05785 yqhG 1087074..1087868 (-) 795 WP_003230200.1 YqhG family protein -
  IRJ28_RS05790 yqhH 1087889..1089562 (-) 1674 WP_004398544.1 SNF2-related protein -
  IRJ28_RS05795 gcvT 1090004..1091092 (+) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=499464 IRJ28_RS05775 WP_003226345.1 1086349..1086684(-) (sinR) [Bacillus subtilis strain N1142-3at]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=499464 IRJ28_RS05775 WP_003226345.1 1086349..1086684(-) (sinR) [Bacillus subtilis strain N1142-3at]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1