Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IRJ27_RS18725 Genome accession   NZ_CP064095
Coordinates   3621985..3622320 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain N1303-2Ay     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3616985..3627320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS18675 comGC 3617004..3617300 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  IRJ27_RS18680 comGD 3617290..3617721 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  IRJ27_RS18685 comGE 3617705..3618052 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  IRJ27_RS18690 comGF 3618078..3618461 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  IRJ27_RS18695 comGG 3618462..3618836 (+) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  IRJ27_RS18700 spoIIT 3618907..3619086 (+) 180 WP_003230176.1 YqzE family protein -
  IRJ27_RS18705 yqzG 3619128..3619454 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  IRJ27_RS18710 tapA 3619726..3620487 (+) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  IRJ27_RS18715 sipW 3620471..3621043 (+) 573 WP_003246088.1 signal peptidase I -
  IRJ27_RS18720 tasA 3621107..3621892 (+) 786 WP_004398632.1 biofilm matrix protein TasA -
  IRJ27_RS18725 sinR 3621985..3622320 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  IRJ27_RS18730 sinI 3622354..3622527 (-) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  IRJ27_RS18735 yqhG 3622710..3623504 (-) 795 WP_003230200.1 YqhG family protein -
  IRJ27_RS18740 yqhH 3623525..3625198 (-) 1674 WP_004398544.1 SNF2-related protein -
  IRJ27_RS18745 gcvT 3625640..3626728 (+) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=499433 IRJ27_RS18725 WP_003226345.1 3621985..3622320(-) (sinR) [Bacillus subtilis strain N1303-2Ay]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=499433 IRJ27_RS18725 WP_003226345.1 3621985..3622320(-) (sinR) [Bacillus subtilis strain N1303-2Ay]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1