Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   IRJ27_RS18665 Genome accession   NZ_CP064095
Coordinates   3614896..3615966 (+) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain N1303-2Ay     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3609896..3620966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS18635 yqgY 3610090..3610335 (-) 246 WP_003226300.1 DUF2626 domain-containing protein -
  IRJ27_RS18640 mgsR 3610567..3610947 (+) 381 WP_003230147.1 transcriptional regulator MgsR -
  IRJ27_RS18650 rsbRD 3611171..3612007 (+) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -
  IRJ27_RS18655 yqhB 3612060..3613388 (-) 1329 WP_009967730.1 hemolysin family protein -
  IRJ27_RS18660 corA 3613531..3614484 (+) 954 WP_004399136.1 magnesium transporter CorA -
  IRJ27_RS18665 comGA 3614896..3615966 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  IRJ27_RS18670 comGB 3615953..3616990 (+) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  IRJ27_RS18675 comGC 3617004..3617300 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  IRJ27_RS18680 comGD 3617290..3617721 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  IRJ27_RS18685 comGE 3617705..3618052 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  IRJ27_RS18690 comGF 3618078..3618461 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  IRJ27_RS18695 comGG 3618462..3618836 (+) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  IRJ27_RS18700 spoIIT 3618907..3619086 (+) 180 WP_003230176.1 YqzE family protein -
  IRJ27_RS18705 yqzG 3619128..3619454 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  IRJ27_RS18710 tapA 3619726..3620487 (+) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=499426 IRJ27_RS18665 WP_004399124.1 3614896..3615966(+) (comGA) [Bacillus subtilis strain N1303-2Ay]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=499426 IRJ27_RS18665 WP_004399124.1 3614896..3615966(+) (comGA) [Bacillus subtilis strain N1303-2Ay]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1