Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   IRJ27_RS11860 Genome accession   NZ_CP064095
Coordinates   2327698..2327817 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain N1303-2Ay     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2322698..2332817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS11840 pbpG 2323054..2325129 (-) 2076 WP_003227540.1 transglycosylase domain-containing protein -
  IRJ27_RS11845 speE 2325331..2326161 (+) 831 WP_003227543.1 spermidine synthase -
  IRJ27_RS11850 speB 2326222..2327094 (+) 873 WP_003227545.1 agmatinase -
  IRJ27_RS11855 ywhH 2327126..2327599 (-) 474 WP_003227547.1 YbaK/EbsC family protein -
  IRJ27_RS11860 phrF 2327698..2327817 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  IRJ27_RS11865 rapF 2327801..2328946 (-) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  IRJ27_RS22160 - 2328949..2329179 (+) 231 WP_009968328.1 hypothetical protein -
  IRJ27_RS11870 ywhK 2329176..2330531 (+) 1356 WP_003227552.1 YncE family protein -
  IRJ27_RS11875 ywhL 2330570..2331946 (+) 1377 WP_003244415.1 YncE family protein -
  IRJ27_RS11880 albG 2331952..2332653 (-) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=499398 IRJ27_RS11860 WP_009968329.1 2327698..2327817(-) (phrF) [Bacillus subtilis strain N1303-2Ay]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=499398 IRJ27_RS11860 WP_009968329.1 2327698..2327817(-) (phrF) [Bacillus subtilis strain N1303-2Ay]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487