Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JFX56_RS09455 Genome accession   NZ_CP075649
Coordinates   2003479..2004906 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain STEC17-190     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1998479..2009906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFX56_RS09425 (JFX56_09425) yeeZ 1998534..1999358 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  JFX56_RS09430 (JFX56_09430) yeeY 1999404..2000333 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JFX56_RS09435 (JFX56_09435) yoeI 2000548..2000610 (+) 63 WP_010723108.1 membrane protein YoeI -
  JFX56_RS09440 (JFX56_09440) plaP 2000600..2001958 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JFX56_RS09445 (JFX56_09445) tsuA 2002137..2003195 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  JFX56_RS09450 (JFX56_09450) tsuB 2003209..2003436 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JFX56_RS09455 (JFX56_09455) sbcB 2003479..2004906 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  JFX56_RS09460 (JFX56_09460) dacD 2005115..2006281 (+) 1167 WP_001379902.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JFX56_RS09465 (JFX56_09465) sbmC 2006400..2006873 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  JFX56_RS09470 (JFX56_09470) yeeA 2007071..2008129 (+) 1059 WP_001200891.1 FUSC family protein -
  JFX56_RS09475 (JFX56_09475) tmaR 2008301..2008630 (+) 330 WP_000450409.1 DUF496 family protein -
  JFX56_RS09480 (JFX56_09480) - 2008731..2009174 (-) 444 WP_001189436.1 EutP/PduV family microcompartment system protein -
  JFX56_RS09485 (JFX56_09485) pduU 2009179..2009529 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=499342 JFX56_RS09455 WP_000980607.1 2003479..2004906(-) (sbcB) [Escherichia coli strain STEC17-190]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=499342 JFX56_RS09455 WP_000980607.1 2003479..2004906(-) (sbcB) [Escherichia coli strain STEC17-190]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583