Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   IRJ26_RS10735 Genome accession   NZ_CP064094
Coordinates   2044280..2045002 (+) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain N1108-5at     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2039280..2050002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS10710 degS 2039591..2040748 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IRJ26_RS10715 degU 2040831..2041520 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IRJ26_RS10720 fakBA 2041618..2042463 (+) 846 WP_003244125.1 DegV family protein -
  IRJ26_RS10725 comFA 2042569..2043960 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  IRJ26_RS10730 comFB 2044020..2044316 (+) 297 WP_003227989.1 late competence protein ComFB -
  IRJ26_RS10735 comFC 2044280..2045002 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  IRJ26_RS10740 yvyF 2045076..2045495 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IRJ26_RS10745 flgM 2045576..2045842 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  IRJ26_RS10750 flgN 2045858..2046340 (+) 483 WP_003227999.1 flagellar protein FlgN -
  IRJ26_RS10755 flgK 2046359..2047882 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  IRJ26_RS10760 flgL 2047893..2048789 (+) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  IRJ26_RS10765 yviE 2048836..2049411 (+) 576 WP_003243053.1 DUF6470 family protein -
  IRJ26_RS10770 fliW 2049432..2049863 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=499314 IRJ26_RS10735 WP_003227991.1 2044280..2045002(+) (comFC) [Bacillus subtilis strain N1108-5at]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=499314 IRJ26_RS10735 WP_003227991.1 2044280..2045002(+) (comFC) [Bacillus subtilis strain N1108-5at]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1