Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IRJ26_RS10715 Genome accession   NZ_CP064094
Coordinates   2040831..2041520 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain N1108-5at     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2035831..2046520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS10695 tagO 2036397..2037473 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  IRJ26_RS10700 tagV 2037546..2038721 (-) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  IRJ26_RS10705 yvyE 2038721..2039374 (-) 654 WP_003227979.1 YigZ family protein -
  IRJ26_RS10710 degS 2039591..2040748 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IRJ26_RS10715 degU 2040831..2041520 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IRJ26_RS10720 fakBA 2041618..2042463 (+) 846 WP_003244125.1 DegV family protein -
  IRJ26_RS10725 comFA 2042569..2043960 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  IRJ26_RS10730 comFB 2044020..2044316 (+) 297 WP_003227989.1 late competence protein ComFB -
  IRJ26_RS10735 comFC 2044280..2045002 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  IRJ26_RS10740 yvyF 2045076..2045495 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IRJ26_RS10745 flgM 2045576..2045842 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  IRJ26_RS10750 flgN 2045858..2046340 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=499312 IRJ26_RS10715 WP_003219701.1 2040831..2041520(+) (degU) [Bacillus subtilis strain N1108-5at]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=499312 IRJ26_RS10715 WP_003219701.1 2040831..2041520(+) (degU) [Bacillus subtilis strain N1108-5at]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1