Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   IRJ24_RS21340 Genome accession   NZ_CP064093
Coordinates   4062262..4063215 (-) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain N1282-4at     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4057262..4068215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS21310 appD 4057381..4058367 (-) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -
  IRJ24_RS21315 yjaZ 4058559..4059344 (-) 786 WP_003232967.1 DUF2268 domain-containing protein -
  IRJ24_RS21320 fabF 4059420..4060661 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  IRJ24_RS21325 fabH 4060684..4061622 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  IRJ24_RS21330 yjzB 4061787..4062026 (+) 240 WP_003232972.1 spore coat protein YjzB -
  IRJ24_RS21335 comZ 4062056..4062247 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  IRJ24_RS21340 med 4062262..4063215 (-) 954 WP_003245494.1 transcriptional regulator Med Regulator
  IRJ24_RS21345 - 4063306..4063863 (-) 558 WP_003232974.1 hypothetical protein -
  IRJ24_RS21350 - 4063945..4064679 (-) 735 WP_003245223.1 hypothetical protein -
  IRJ24_RS21355 yjzD 4064928..4065113 (+) 186 WP_003245236.1 DUF2929 domain-containing protein -
  IRJ24_RS21360 yjzC 4065159..4065338 (-) 180 WP_003245356.1 YjzC family protein -
  IRJ24_RS21365 argF 4065424..4066383 (-) 960 WP_003232980.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=499261 IRJ24_RS21340 WP_003245494.1 4062262..4063215(-) (med) [Bacillus subtilis strain N1282-4at]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=499261 IRJ24_RS21340 WP_003245494.1 4062262..4063215(-) (med) [Bacillus subtilis strain N1282-4at]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1