Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   IRJ24_RS07375 Genome accession   NZ_CP064093
Coordinates   1422568..1422687 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain N1282-4at     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417568..1427687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS07355 pbpG 1417924..1419999 (-) 2076 WP_003227540.1 transglycosylase domain-containing protein -
  IRJ24_RS07360 speE 1420201..1421031 (+) 831 WP_003227543.1 spermidine synthase -
  IRJ24_RS07365 speB 1421092..1421964 (+) 873 WP_003227545.1 agmatinase -
  IRJ24_RS07370 ywhH 1421996..1422469 (-) 474 WP_003227547.1 YbaK/EbsC family protein -
  IRJ24_RS07375 phrF 1422568..1422687 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  IRJ24_RS07380 rapF 1422671..1423816 (-) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  IRJ24_RS22155 - 1423819..1424049 (+) 231 WP_009968328.1 hypothetical protein -
  IRJ24_RS07385 ywhK 1424046..1425401 (+) 1356 WP_003227552.1 YncE family protein -
  IRJ24_RS07390 ywhL 1425440..1426816 (+) 1377 WP_003244415.1 YncE family protein -
  IRJ24_RS07395 albG 1426822..1427523 (-) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=499206 IRJ24_RS07375 WP_009968329.1 1422568..1422687(-) (phrF) [Bacillus subtilis strain N1282-4at]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=499206 IRJ24_RS07375 WP_009968329.1 1422568..1422687(-) (phrF) [Bacillus subtilis strain N1282-4at]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487