Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ22_RS17170 Genome accession   NZ_CP064092
Coordinates   3314620..3314910 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus licheniformis strain C5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3309620..3319910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS17130 - 3309644..3309973 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  IRJ22_RS17135 - 3309985..3310425 (+) 441 WP_003178158.1 YaaR family protein -
  IRJ22_RS17140 holB 3310437..3311426 (+) 990 WP_003178160.1 DNA polymerase III subunit delta' -
  IRJ22_RS17145 - 3311429..3312256 (+) 828 WP_003178162.1 PSP1 domain-containing protein -
  IRJ22_RS17150 yabA 3312271..3312633 (+) 363 WP_003178164.1 DNA replication initiation control protein YabA -
  IRJ22_RS17155 - 3312698..3313441 (+) 744 WP_003178166.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IRJ22_RS17160 - 3313428..3313721 (+) 294 WP_003178169.1 GIY-YIG nuclease family protein -
  IRJ22_RS17165 rsmI 3313696..3314571 (+) 876 WP_025805862.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IRJ22_RS17170 abrB 3314620..3314910 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IRJ22_RS17175 metG 3315418..3317406 (+) 1989 WP_003178175.1 methionine--tRNA ligase -
  IRJ22_RS17180 - 3317491..3318258 (+) 768 WP_003178177.1 TatD family hydrolase -
  IRJ22_RS17185 - 3318375..3319700 (+) 1326 WP_021837373.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=499174 IRJ22_RS17170 WP_085959887.1 3314620..3314910(-) (abrB) [Bacillus licheniformis strain C5]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=499174 IRJ22_RS17170 WP_085959887.1 3314620..3314910(-) (abrB) [Bacillus licheniformis strain C5]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938