Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HK81_RS18620 Genome accession   NC_021848
Coordinates   2327905..2328633 (+) Length   242 a.a.
NCBI ID   WP_020904194.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:K33 str. CDC_K4557     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2322905..2333633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK81_RS18605 (M636_19035) clpC 2323340..2325913 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  HK81_RS18610 (M636_19040) pgeF 2326061..2326789 (-) 729 WP_020904193.1 peptidoglycan editing factor PgeF -
  HK81_RS18615 (M636_19045) rluD 2326791..2327768 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HK81_RS18620 (M636_19050) comL 2327905..2328633 (+) 729 WP_020904194.1 outer membrane protein assembly factor BamD Machinery gene
  HK81_RS18625 (M636_19055) - 2328769..2330250 (+) 1482 WP_029559487.1 lytic transglycosylase F -
  HK81_RS18630 (M636_19060) hpf 2330581..2330907 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HK81_RS18635 (M636_19065) pheA 2331151..2332329 (+) 1179 WP_005468591.1 prephenate dehydratase -
  HK81_RS18640 (M636_19070) yjjX 2332354..2332887 (+) 534 WP_031792110.1 inosine/xanthosine triphosphatase -
  HK81_RS18645 (M636_19075) trpR 2332936..2333247 (-) 312 WP_020904197.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27875.81 Da        Isoelectric Point: 5.8151

>NTDB_id=49917 HK81_RS18620 WP_020904194.1 2327905..2328633(+) (comL) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=49917 HK81_RS18620 WP_020904194.1 2327905..2328633(+) (comL) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGATCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTCAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAACATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAATAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

40.833

99.174

0.405
  comL Neisseria gonorrhoeae MS11

40.417

99.174

0.401

Multiple sequence alignment