Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IRJ22_RS08360 Genome accession   NZ_CP064092
Coordinates   1597053..1597388 (+) Length   111 a.a.
NCBI ID   WP_025804940.1    Uniprot ID   A0AB37GFT9
Organism   Bacillus licheniformis strain C5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1592053..1602388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS08340 gcvT 1592485..1593579 (-) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -
  IRJ22_RS08345 - 1594172..1595851 (+) 1680 WP_003183439.1 DEAD/DEAH box helicase -
  IRJ22_RS08350 - 1595858..1596652 (+) 795 WP_003183441.1 YqhG family protein -
  IRJ22_RS08355 sinI 1596843..1597019 (+) 177 WP_003183444.1 anti-repressor SinI Regulator
  IRJ22_RS08360 sinR 1597053..1597388 (+) 336 WP_025804940.1 transcriptional regulator SinR Regulator
  IRJ22_RS08365 tasA 1597493..1598287 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  IRJ22_RS08370 sipW 1598361..1598945 (-) 585 WP_003183449.1 signal peptidase I SipW -
  IRJ22_RS08375 tapA 1598942..1599670 (-) 729 WP_011198112.1 amyloid fiber anchoring/assembly protein TapA -
  IRJ22_RS08380 - 1599947..1600267 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  IRJ22_RS08385 - 1600297..1600479 (-) 183 WP_003183456.1 YqzE family protein -
  IRJ22_RS08390 comGG 1600568..1600933 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  IRJ22_RS08395 comGF 1600946..1601434 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  IRJ22_RS08400 comGE 1601343..1601690 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  IRJ22_RS08405 comGD 1601674..1602111 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12991.60 Da        Isoelectric Point: 5.9495

>NTDB_id=499139 IRJ22_RS08360 WP_025804940.1 1597053..1597388(+) (sinR) [Bacillus licheniformis strain C5]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=499139 IRJ22_RS08360 WP_025804940.1 1597053..1597388(+) (sinR) [Bacillus licheniformis strain C5]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928