Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IRJ21_RS14020 Genome accession   NZ_CP064091
Coordinates   2888923..2889360 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain C1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2883923..2894360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS13995 - 2884943..2886079 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  IRJ21_RS14000 - 2886094..2886528 (+) 435 WP_014416871.1 RDD family protein -
  IRJ21_RS14005 - 2886600..2886923 (+) 324 WP_007409357.1 YckD family protein -
  IRJ21_RS14010 - 2887027..2888463 (+) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  IRJ21_RS14015 nin/comJ 2888504..2888902 (-) 399 WP_029973909.1 competence protein ComJ Regulator
  IRJ21_RS14020 nucA/comI 2888923..2889360 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IRJ21_RS14025 hxlB 2889691..2890248 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  IRJ21_RS14030 hxlA 2890245..2890880 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  IRJ21_RS14035 - 2891112..2891474 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=499084 IRJ21_RS14020 WP_003156588.1 2888923..2889360(-) (nucA/comI) [Bacillus velezensis strain C1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=499084 IRJ21_RS14020 WP_003156588.1 2888923..2889360(-) (nucA/comI) [Bacillus velezensis strain C1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641