Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IRJ21_RS07445 Genome accession   NZ_CP064091
Coordinates   1576318..1576962 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain C1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1571318..1581962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS07410 - 1572503..1572934 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  IRJ21_RS07415 - 1572934..1573275 (+) 342 WP_022553706.1 Na(+)/H(+) antiporter subunit C -
  IRJ21_RS07420 - 1573268..1574749 (+) 1482 WP_021495363.1 Na+/H+ antiporter subunit D -
  IRJ21_RS07425 - 1574755..1575231 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  IRJ21_RS07430 - 1575231..1575515 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  IRJ21_RS07435 mnhG 1575499..1575873 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  IRJ21_RS07440 - 1575913..1576296 (-) 384 WP_065180456.1 hotdog fold thioesterase -
  IRJ21_RS07445 comA 1576318..1576962 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  IRJ21_RS20135 comP 1577043..1578074 (-) 1032 WP_341275238.1 sensor histidine kinase Regulator
  IRJ21_RS07455 comX 1579364..1579540 (-) 177 WP_017419424.1 competence pheromone ComX -
  IRJ21_RS07460 - 1579555..1580451 (-) 897 WP_017419425.1 polyprenyl synthetase family protein -
  IRJ21_RS07465 degQ 1580582..1580722 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  IRJ21_RS07470 - 1581187..1581528 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=499062 IRJ21_RS07445 WP_014418762.1 1576318..1576962(-) (comA) [Bacillus velezensis strain C1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=499062 IRJ21_RS07445 WP_014418762.1 1576318..1576962(-) (comA) [Bacillus velezensis strain C1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTTCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86